View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212_high_5 (Length: 410)
Name: NF5212_high_5
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 150 - 403
Target Start/End: Original strand, 3925639 - 3925892
Alignment:
| Q |
150 |
gtacacaaacatgactaaatattctaacacacctaggatagcgctgcatacatacaagcataaaacaaaattaaaaaagtgtcaatgattaacatgtatt |
249 |
Q |
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| T |
3925639 |
gtacacaaacatgactaaatattctaacacacctaggatagcgctgcatacatacaagcatcaaacaaaattaaaaaagtgtcaatgattaacatgtatt |
3925738 |
T |
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| Q |
250 |
ttcagtacgtttatagattaggatgtgtttagatgaatttttagaaaagcaaaaccgcgatgaatgttgataaacacaaataatatagagatgaatttgg |
349 |
Q |
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| T |
3925739 |
ttcagtacgttcatagattaggatgtgtttagatgaatttttagaaaagcaaaaccgcgatgaatgttgataaacacaaataatatagagatgaatttgg |
3925838 |
T |
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| Q |
350 |
aaaacaaacatacctcttgaagaaaaccaaaaatagagaggcttagaataattt |
403 |
Q |
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| T |
3925839 |
aaaacatacatacctcttgaagaaaaccaaaaatagagaggcttagaataattt |
3925892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 3925503 - 3925545
Alignment:
| Q |
18 |
atataaatcataaattgaagcttggaccatatgcaaatggagc |
60 |
Q |
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| T |
3925503 |
atataaatcttaaattgaagcttggaccatatgcaaatagagc |
3925545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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