View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212_high_7 (Length: 348)
Name: NF5212_high_7
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212_high_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 43 - 348
Target Start/End: Complemental strand, 12810951 - 12810642
Alignment:
| Q |
43 |
atatcccttttaaacgtttaatcttttggttctatcactgtatctctccactnnnnnnntactgtaataagtaatatcttccatctttatgtccagcttt |
142 |
Q |
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| T |
12810951 |
atatcccttttaaacgtttaatcttttggctctatcactgtatctctccactaaaaaaatactgtaataagtaatatcttccatctttatgtccagcttt |
12810852 |
T |
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| Q |
143 |
attacaaggtggagcagggtttagaatttggaaccactctttggcttttaggtcaatttgaggaatgacaaaatattc--tttttcttactgtacaacaa |
240 |
Q |
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| T |
12810851 |
attacaaggtggagcagggtttaaaatttggaatcactctttggcttttaggtcattttgaggaatgacaaaatcttcttttttttttactgtacaacta |
12810752 |
T |
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| Q |
241 |
tcagtaattatttgtgattaagtttcttttgtctcgcacttaatgnnnnnnntaaagtttcttttgt--acaaaatagtttctcagcattttgatgctaa |
338 |
Q |
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| T |
12810751 |
tcagtaattatttgtgattaagtttcttttgtctctcacttaatgaaaaaaataaagtttcttttgtaaacaaaatagtttctcagcattttgatgctaa |
12810652 |
T |
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| Q |
339 |
ggtcttacaa |
348 |
Q |
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| T |
12810651 |
ggtcttacaa |
12810642 |
T |
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