View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212_low_10 (Length: 338)
Name: NF5212_low_10
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 2525136 - 2524821
Alignment:
| Q |
11 |
cgggtaacattgatgtaagaagaaccaccattgagggcaatacaatcatcacctatttataagaaataaaattcattttaaaattggacatgtatgttga |
110 |
Q |
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| T |
2525136 |
cgggtaacattgatgtaagaagaaccaccattgagggcaatacaatcatcacctatttataagaaataaaattcattttaaaattggacatgtatgttga |
2525037 |
T |
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| Q |
111 |
tcatggctataaaatgcatttttgatttgatatttgtactaccttcttttataaacaaagatatgttatagagattatgatggatacttgaacccaatac |
210 |
Q |
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| T |
2525036 |
tcatggctataaaatgcatttttgatttgatatttgtactgccttcttttataaacaaagatatgttatagagattatgatggatacttgaacccaataa |
2524937 |
T |
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| Q |
211 |
aaatatttgaatcaaagatgtctttc-atgcacattacatgcatgtttagaacaccaatcaacaaaactataacataacttccttgccctatgagattca |
309 |
Q |
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| T |
2524936 |
aaatatttgaatcaaagatgtctttcaatgcacatta----catgtttagaacaccgatcaacaaaactataacataacttccttgccctatgagattca |
2524841 |
T |
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| Q |
310 |
aaccaactctccagtataat |
329 |
Q |
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|||||||||||||||||||| |
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| T |
2524840 |
aaccaactctccagtataat |
2524821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 32924824 - 32924749
Alignment:
| Q |
26 |
taagaagaaccaccattgagggcaatacaatcatcacctatttataagaaataaaattcattttaaaattggacat |
101 |
Q |
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||||| || |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
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| T |
32924824 |
taagaggagccaccattgatggcaatacaatcatcacctatttataagaaaaccaactcattttaaaattgcacat |
32924749 |
T |
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