View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5212_low_13 (Length: 261)
Name: NF5212_low_13
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212_low_13 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0112 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 7642924 - 7643167
Alignment:
| Q |
18 |
gaaatgtcgtttcgactaactccataaggttacaagctcgatctactacataagtacatgtttctgtgacatcttgtcaaaacttgaaatttatatgctt |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
7642924 |
gaaatgtcgtttcgactagctccataaggttacaagctcgatctactacatgagtacatgtttctgtgacatcctgtcaaaacttgaaatttctatgctt |
7643023 |
T |
|
| Q |
118 |
ccaaaggctcgagaggacagctgcaaatcattgaccaaattctcgcgagagctgatgcaacgatttgaaaatggcatcaactgctgaattattttcaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7643024 |
ccaaaggctcgagaggacagctgcaaatcattgaccaaattctcgcgagagctgatgcaacgatttgaaaatggcatcaactgctgaattattttcaaaa |
7643123 |
T |
|
| Q |
218 |
aatgcctcatgaaccacattccaaagaccaatcatatgccaaac |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7643124 |
aatgcctcatgaaccacattccaaagaccaatcatatgccaaac |
7643167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 73 - 261
Target Start/End: Complemental strand, 20250945 - 20250757
Alignment:
| Q |
73 |
acatgtttctgtgacatcttgtcaaaacttgaaatttatatgcttccaaaggctcgagaggacagctgcaaatcattgaccaaattctcgcgagagctga |
172 |
Q |
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|||||||| |||| | ||||| |||| |||| |||| ||||||| ||||||||| | ||| ||||||||||| |||||||| |||| |||| |||||| |
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| T |
20250945 |
acatgtttttgtgccctcttgccaaagtttgagatttctatgctttcaaaggctccaaagggtagctgcaaatcgttgaccaagttcttgcgaaagctga |
20250846 |
T |
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| Q |
173 |
tgcaacgatttgaaaatggcatcaactgctgaattattttcaaaaaatgcctcatgaaccacattccaaagaccaatcatatgccaaac |
261 |
Q |
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| T |
20250845 |
tgtagcaattcgaaaatggcatcaactgctgaattctttttgagaaacacctcatgaaccacattccaaaggccaatcttacgccaaac |
20250757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 37 - 261
Target Start/End: Complemental strand, 26131379 - 26131156
Alignment:
| Q |
37 |
ctccataaggttacaagctcgatctactacataagtacatgtttctgtgacatcttgtcaaaacttgaaatttatatgcttccaaaggctcgagaggaca |
136 |
Q |
| |
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||||||||||| |||||||||||||||||||| || ||||||||||||| | ||||| |||| |||| |||| ||||||||||||||||| | |||||| |
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| T |
26131379 |
ctccataaggtgacaagctcgatctactacatgagcacatgtttctgtggcctcttgccaaagtttgagatttctatgcttccaaaggctccaaaggaca |
26131280 |
T |
|
| Q |
137 |
gctgcaaatcattgaccaaattctcgcgagagctgatgcaacgatttgaaaatggcatcaactgctgaatt-attttcaaaaaatgcctcatgaaccaca |
235 |
Q |
| |
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|||||||||| |||||||| |||| ||||||||||||| ||| ||| |||||||||||||| | |||||| |||| || ||| ||||||||||| || |
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| T |
26131279 |
gctgcaaatcgttgaccaagttcttgcgagagctgatgtaacaattcgaaaatggcatcaatt--tgaattcttttttaagaaacacctcatgaaccgca |
26131182 |
T |
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| Q |
236 |
ttccaaagaccaatcatatgccaaac |
261 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
26131181 |
ttccaaaggccaatcatatgccaaac |
26131156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 261
Target Start/End: Original strand, 43218652 - 43218862
Alignment:
| Q |
51 |
aagctcgatctactacataagtacatgtttctgtgacatcttgtcaaaacttgaaatttatatgcttccaaaggctcgagaggacagctgcaaatcattg |
150 |
Q |
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|||| |||||||||||| || | |||||| |||| ||||| |||| |||| |||| |||||| |||||||||| | ||| ||||||||||| ||| |
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| T |
43218652 |
aagcccgatctactacaagagcatatgtttatgtggtctcttgccaaagtttgagatttctatgctcccaaaggctccaaagggtagctgcaaatcgttg |
43218751 |
T |
|
| Q |
151 |
accaaattctcgcgagagctgatgcaacgatttgaaaatggcatcaactgctgaattattttcaaaaaatgcctcatgaaccacattccaaagaccaatc |
250 |
Q |
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||||| |||| ||||||||||||| | | ||| |||||||||||||||||||||||| ||||| | ||| |||||||||||||||||||||| |||||| |
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| T |
43218752 |
accaagttcttgcgagagctgatgtagcaattcgaaaatggcatcaactgctgaattcttttcgagaaacacctcatgaaccacattccaaaggccaatc |
43218851 |
T |
|
| Q |
251 |
atatgccaaac |
261 |
Q |
| |
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|| ||||||| |
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| T |
43218852 |
ttacgccaaac |
43218862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 41418390 - 41418513
Alignment:
| Q |
37 |
ctccataaggttacaagctcgatctactacataagtacatgtttctgtgacatcttgtcaaaacttgaaatttatatgcttccaaaggctcgagaggaca |
136 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| || ||| ||||||||||||||||| |||| ||||| |||| ||||||||||||||||| | |||||| |
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| T |
41418390 |
ctccataaggtgacaagctcgatcgactacatgagcacaagtttctgtgacatcttgccaaagcttgagatttctatgcttccaaaggctccataggaca |
41418489 |
T |
|
| Q |
137 |
gctgcaaatcattgaccaaattct |
160 |
Q |
| |
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| ||||||| |||||| ||||||| |
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| T |
41418490 |
gttgcaaattattgactaaattct |
41418513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 246
Target Start/End: Complemental strand, 34081 - 33872
Alignment:
| Q |
37 |
ctccataaggttacaagctcgatctactacataagtacatgtttctgtgacatcttgtcaaaacttgaaatttatatgcttccaaaggctcgagaggaca |
136 |
Q |
| |
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||||||||||| |||||||||||| ||||||| || ||| |||| |||||||||||| |||| |||| |||| ||||||||||||||||| | |||||| |
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| T |
34081 |
ctccataaggtgacaagctcgatcgactacatgagcacaagtttatgtgacatcttgccaaaggttgagatttctatgcttccaaaggctccataggaca |
33982 |
T |
|
| Q |
137 |
gctgcaaatcattgaccaaattctcgcgagagctgatgcaacgatttgaaaatggcatcaactgctgaattattttcaaaaaatgcctcatgaaccacat |
236 |
Q |
| |
|
|||||||| ||||| ||||||| | || || ||||| | | ||| ||| ||||||||| ||||| |||| ||||||| ||| | |||||||||| || |
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| T |
33981 |
attgcaaatcgttgactaaattcttgtgaaagttgatgtagcaattcgaatatggcatcagctgctaaattcttttcaagaaacacatcatgaaccatat |
33882 |
T |
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| Q |
237 |
tccaaagacc |
246 |
Q |
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|||||||||| |
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| T |
33881 |
tccaaagacc |
33872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 244
Target Start/End: Complemental strand, 8789979 - 8789773
Alignment:
| Q |
37 |
ctccataaggttacaagctcgatctactacataagtacatgtttctgtgacatcttgtcaaaacttgaaatttatatgcttccaaaggctcgagaggaca |
136 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| || ||| |||| |||||||||||| |||| ||||| |||| |||||||||||||| || | |||||| |
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| T |
8789979 |
ctccataaggtgacaagctcgatcgactacatgagcacaagtttatgtgacatcttgccaaagcttgagatttctatgcttccaaaggatccataggaca |
8789880 |
T |
|
| Q |
137 |
gctgcaaatcattgaccaaattctcgcgagagctgatgcaacgatttgaaaatggcatcaactgctgaattattttcaaaaaatgcctcatgaaccacat |
236 |
Q |
| |
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| |||||||| |||| | |||| | | || || ||||| | | ||| ||| ||||||||| | | |||||| ||||||| ||| ||||||||||| || |
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| T |
8789879 |
gttgcaaatcgttga-ctaatttttgtgaaagttgatgtagcaattcgaatatggcatcagcggttgaattcttttcaagaaacacctcatgaaccgtat |
8789781 |
T |
|
| Q |
237 |
tccaaaga |
244 |
Q |
| |
|
|||||||| |
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|
| T |
8789780 |
tccaaaga |
8789773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 15617725 - 15617517
Alignment:
| Q |
37 |
ctccataaggttacaagctcgatctactacataagtacatgtttctgtgacatcttgtcaaaacttgaaatttatatgcttccaaaggctcgagaggaca |
136 |
Q |
| |
|
||||||| ||| ||||||||| ||||||| | || |||||||| |||||||||||| |||| || | |||| |||||||| ||||||| |||||| | |
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|
| T |
15617725 |
ctccatatggtgacaagctcggtctactatctgagcacatgtttatgtgacatcttgccaaagtttaagatttctatgcttctgaaggctctagaggata |
15617626 |
T |
|
| Q |
137 |
gctgcaaatcattgaccaaattctcgcgagagctgatgcaacgatttgaaaatggcatcaactgctgaattattttcaaaaaatgcctcatgaaccacat |
236 |
Q |
| |
|
||||||| || ||| |||||||| ||||||||| ||| || ||| || |||||||||||| ||||||| ||||| | ||| || || | |||||||| |
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| T |
15617625 |
gctgcaactcgttggtcaaattcttgcgagagcttatgtgacaattcaaagatggcatcaactactgaattcttttcgagaaacgcttcgttaaccacat |
15617526 |
T |
|
| Q |
237 |
tccaaagac |
245 |
Q |
| |
|
||||||||| |
|
|
| T |
15617525 |
tccaaagac |
15617517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 242
Target Start/End: Original strand, 16933 - 17126
Alignment:
| Q |
49 |
acaagctcgatctactacataagtacatgtttctgtgacatcttgtcaaaacttgaaatttatatgcttccaaaggctcgagaggacagctgcaaatcat |
148 |
Q |
| |
|
|||||||||||| || |||| || ||| |||| ||||| | ||| |||| ||||| |||| |||||||||||||||| | |||||| ||||||| | |
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|
| T |
16933 |
acaagctcgatcgacaacatgagcacaagtttatgtgatgttttgccaaagcttgagatttctatgcttccaaaggctaaataggacaattgcaaattgt |
17032 |
T |
|
| Q |
149 |
tgaccaaattctcgcgagagctgatgcaacgatttgaaaatggcatcaactgctgaattattttcaaaaaatgcctcatgaaccacattccaaa |
242 |
Q |
| |
|
|||| ||||||| | || || ||||| | | ||||||| ||||||||| ||||| | || ||||||| ||| |||||||||||| |||||||| |
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|
| T |
17033 |
tgactaaattcttgtgaaagttgatgtagcaatttgaatatggcatcagctgctaatttcttttcaagaaacacctcatgaaccatattccaaa |
17126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 213
Target Start/End: Complemental strand, 51748596 - 51748421
Alignment:
| Q |
37 |
ctccataaggttacaagctcgatctactacataagtacatgtttctgtgacatcttgtcaaaacttgaaatttatatgcttccaaaggctcgagaggaca |
136 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| | | |||||| |||| ||||||| | | |||| |||| |||||||| |||||||| | |||||| |
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|
| T |
51748596 |
ctccataaggtgacaaactcgatctactacatgaacatatgtttttgtggcatcttgcctaggtttgagatttctatgcttcgaaaggctccaaaggaca |
51748497 |
T |
|
| Q |
137 |
gctgcaaatcattgaccaaattctcgcgagagctgatgcaacgatttgaaaatggcatcaactgctgaattattttc |
213 |
Q |
| |
|
||||||| |||| ||| ||| ||| | ||||| ||| ||| |||||||||||||| |||||| |||||||| |
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|
| T |
51748496 |
tatgcaaattgttgatcaagatcttacgaaaattgatgtaacaattcgaaaatggcatcaa-tgctgagttattttc |
51748421 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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