View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212_low_14 (Length: 259)
Name: NF5212_low_14
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 7643467 - 7643212
Alignment:
| Q |
4 |
agagagatgaacttaagagaggatatgaccaacttttatactttatttcctgttttaattgtgggatttgttatgctagttaacgataattaataggtat |
103 |
Q |
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| T |
7643467 |
agagaaatgaacttaagagaggatatgaccaacttttatactttattttctgttttaattgtgggatttgttatactagttaacgataactaataggtat |
7643368 |
T |
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| Q |
104 |
tcatttttatctttctttaatgaaggtccttaataggttgatgatcttgttaagtaaaggacttccccattggaattgctcttagcctcttatatattat |
203 |
Q |
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| T |
7643367 |
ccatttttatctttctttaatgaaggtccttaataggttgatgatcttgttaagtaaaggacttccccattggaattgctcttagcctcttatatattat |
7643268 |
T |
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| Q |
204 |
tcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcata |
259 |
Q |
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| T |
7643267 |
tcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcata |
7643212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 26131055 - 26131110
Alignment:
| Q |
203 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcat |
258 |
Q |
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| T |
26131055 |
ttcaagataaaggagtgcaatgtcccacaagttgtgtgagttgtggtggcctgcat |
26131110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 8789655 - 8789705
Alignment:
| Q |
203 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtc |
253 |
Q |
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| T |
8789655 |
ttcaagataaaggagtgcaatgtcccataagttgtgtgagctgtgatggtc |
8789705 |
T |
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