View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212_low_16 (Length: 250)
Name: NF5212_low_16
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212_low_16 |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0632 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 104 - 250
Target Start/End: Complemental strand, 36486218 - 36486074
Alignment:
| Q |
104 |
caacaaatatcatctacaaactctcttcactttcttgttctttttgttctagtccattttcatgaagatctatactatataactgatcacacgttttgta |
203 |
Q |
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| T |
36486218 |
caacacatatcatctacaaactct--tcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
36486121 |
T |
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| Q |
204 |
agttgtagtgaacttaagctcattaattaatacatgaaaaaatacct |
250 |
Q |
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| T |
36486120 |
agttgtagtgaaattaagctcatgaattaataaatgaaaaaagacct |
36486074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 28539570 - 28539431
Alignment:
| Q |
104 |
caacaaatatcatctacaaactctcttcactttcttgttctttttgttctagtccattttcatgaagatctatactatataactgatcacacgttttgta |
203 |
Q |
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| T |
28539570 |
caacacatatcatctacaaactct--tcactttcttgttctttttattctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
28539473 |
T |
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| Q |
204 |
agttgtagtgaacttaagctcattaattaatacatgaaaaaa |
245 |
Q |
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| T |
28539472 |
agttgtagtgaaattaagctcatgaattaataaatgaaaaaa |
28539431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 104 - 250
Target Start/End: Original strand, 31600164 - 31600308
Alignment:
| Q |
104 |
caacaaatatcatctacaaactctcttcactttcttgttctttttgttctagtccattttcatgaagatctatactatataactgatcacacgttttgta |
203 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| |
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| T |
31600164 |
caacacatatcatctacaaactct--tcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttctgta |
31600261 |
T |
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| Q |
204 |
agttgtagtgaacttaagctcattaattaatacatgaaaaaatacct |
250 |
Q |
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| T |
31600262 |
agttgtagtgaaattaagctcatgaattaataaatgaaaaaagacct |
31600308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 2672 - 2579
Alignment:
| Q |
152 |
ctagtccattttcatgaagatctatactatataactgatcacacgttttgtaagttgtagtgaacttaagctcattaattaatacatgaaaaaa |
245 |
Q |
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| T |
2672 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcatgaattaataaatgaaaaaa |
2579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 957139 - 957065
Alignment:
| Q |
152 |
ctagtccattttcatgaagatctatactatataactgatcacacgttttgtaagttgtagtgaacttaagctcat |
226 |
Q |
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||||||||||||||||||||| || |||| ||||||||||| | ||||||||||||||||||| |||||||||| |
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| T |
957139 |
ctagtccattttcatgaagatataaactagataactgatcaaattttttgtaagttgtagtgaaattaagctcat |
957065 |
T |
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