View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212_low_17 (Length: 243)
Name: NF5212_low_17
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 36743509 - 36743718
Alignment:
| Q |
18 |
cttggcagcaagacaagatgcattcagtgtttattttgaatgggataatgattttggaataccaggtgcattttacattaaaaattatacacaaggtgag |
117 |
Q |
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| T |
36743509 |
cttggcagcaagacaagatgcattcagtgtttattttgaatgggataatgattttggaataccaggtgcattttacattaaaaattatacacaaggtgag |
36743608 |
T |
|
| Q |
118 |
ttctaccttgtcagtttaactcttgaagacatacctggtcatgattccattacatttctttgcaactcatgggtttacaatgctaaacaatatcgcaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36743609 |
ttctaccttgtcagtttaactcttgaagacatacctggtcatgattccattacatttctttgcaactcatgggtttacaatgctaaacaatatcgcaagg |
36743708 |
T |
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| Q |
218 |
accgaatttt |
227 |
Q |
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|||||||||| |
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| T |
36743709 |
accgaatttt |
36743718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 6458813 - 6458686
Alignment:
| Q |
19 |
ttggcagcaagacaagatgcattcagtgtttattttgaatgggataatgattttggaataccaggtgcattttacattaaaaattatacacaaggtgagt |
118 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| ||| | ||||||||||||| || ||||||||||| | |||||||||||||| ||| | |
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| T |
6458813 |
ttgggagcaagacaagatgcattcagtgttttctttgaatatgatgctaattttggaatacctggagcattttacataagaaattatacacaagctgaat |
6458714 |
T |
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| Q |
119 |
tctaccttgtcagtttaactcttgaaga |
146 |
Q |
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| T |
6458713 |
tcttccttgttagtgtgactcttgaaga |
6458686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 6452635 - 6452526
Alignment:
| Q |
19 |
ttggcagcaagacaagatgcattcagtgtttattttgaatgggataatgattttggaataccaggtgcattttacattaaaaattatacacaaggtgagt |
118 |
Q |
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|||| |||||||||||||||||||||| ||| ||||||| ||| | | |||||||| ||||| ||||||||||| | |||||||||||||| ||||| |
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| T |
6452635 |
ttgggagcaagacaagatgcattcagtattttctttgaatatgatgctaactttggaatcccaggagcattttacataagaaattatacacaagctgagt |
6452536 |
T |
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| Q |
119 |
tctaccttgt |
128 |
Q |
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||| |||||| |
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| T |
6452535 |
tcttccttgt |
6452526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 9602738 - 9602815
Alignment:
| Q |
18 |
cttggcagcaagacaagatgcattcagtgtttattttgaatgggataatgattttggaataccaggtgcattttacat |
95 |
Q |
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||||| |||||||||||||||||| ||| || | ||||| |||||| |||||||||||| ||||| ||||||||||| |
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| T |
9602738 |
cttgggagcaagacaagatgcatttagtattcactttgattgggatgctgattttggaatcccaggagcattttacat |
9602815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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