View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212_low_19 (Length: 227)
Name: NF5212_low_19
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212_low_19 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 31600557 - 31600334
Alignment:
| Q |
6 |
aatttccataactcttattatcttaaatacaaaagatgnnnnnnntgagagaagagaacaatgaaacatgtagcaccgctagctgtgtaagaatagtaat |
105 |
Q |
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| T |
31600557 |
aatttccataactcttattatcttaaatacaaaagatgaaaaaaatgagagaagagaacaatgaaacatgtagcaccgctagctgtgtaagaatagtaat |
31600458 |
T |
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| Q |
106 |
gtcgggaattgttggtgaaaaagtttg--tgtggaattggaaatataacagtagatttggatgtgttccaacctccatcatcacggccacttacctccac |
203 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | | ||||||||||| |
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| T |
31600457 |
gtcgggaattgttggtgaaaaagtttgtgtgtggaattggaaatataacagtagatttggatgtgttccagcctcaatcatcacagacgcttacctccac |
31600358 |
T |
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| Q |
204 |
tacatcagccaccatctccaactt |
227 |
Q |
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|||||||||||||||||||||||| |
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| T |
31600357 |
tacatcagccaccatctccaactt |
31600334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 28539178 - 28539400
Alignment:
| Q |
6 |
aatttccataactcttattatcttaaatacaaaagatgnnnnnnntgagagaagagaacaatgaaacatgtagcaccgctagctgtgtaagaatagtaat |
105 |
Q |
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| T |
28539178 |
aatttccataactcttattatcttaaatacaaaagatgaaaaaa-tgagagaagagaacaatgaaacatgcagcaccgctagctgtgtaagaatagtaat |
28539276 |
T |
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| Q |
106 |
gtcgggaattgttggtgaaaaagtt--tgtgtggaattggaaatataacagtagatttggatgtgttccaacctccatcatcacggccacttacctccac |
203 |
Q |
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| T |
28539277 |
gtcgggaattgttggtgaaaaagtttgtgtgtggaattggaaatataacagtagatttggatgtattccagcctccatcatcacggccgcttacctccag |
28539376 |
T |
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| Q |
204 |
tacatcagccaccatctccaactt |
227 |
Q |
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| T |
28539377 |
tacatcagccaccatctccaactt |
28539400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 36485822 - 36486048
Alignment:
| Q |
6 |
aatttccataactcttatta----tcttaaatacaaaagatgnnnnnnntgagagaagagaacaatgaaacatgtagcaccgctagctgtgtaagaatag |
101 |
Q |
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| T |
36485822 |
aatttccataactcttattaattatcttaaatacaaaagatgaaaaaa-tgagagaagagaacaatgaaacatgtagcaccgctagctatgtaagaatag |
36485920 |
T |
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| Q |
102 |
taatgtcgggaattgttggtgaaaaagtt--tgtgtggaattggaaatataacagtagatttggatgtgttccaacctccatcatcacggccacttacct |
199 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||||| |
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| T |
36485921 |
taatgtcgggaattgttggtgaaaaagtttgtgtgtggaattggaaatataacagtagatttggatgtgttccagcctctatcatcacagccgcttacct |
36486020 |
T |
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| Q |
200 |
ccactacatcagccaccatctccaactt |
227 |
Q |
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| T |
36486021 |
ccactacatcagccaccatctccaactt |
36486048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 956797 - 957019
Alignment:
| Q |
6 |
aatttccataactcttattatcttaaatacaaaagatgnnnnnnntgagagaagagaacaatgaaacatgtagcaccgctagctgtgtaagaatagtaat |
105 |
Q |
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| T |
956797 |
aatttccataactcttatcaccttaaatacaaaagatggaaaaaa-gagagaagagaacaataaaacatgtagca----tagctgcgtaacaataatagt |
956891 |
T |
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| Q |
106 |
gtcgggaattgttggtgaaaaagtttgtgtg--gaattggaaatata----acagtagatttggatgtgttccaacctccatcatcacggccacttacct |
199 |
Q |
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| T |
956892 |
gtcaggaattgatggtgaaaaagtttgtgtgtggaattggaaataaatactacagtagatttggatgtgctacagcctccatcatcacggccgcttacct |
956991 |
T |
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| Q |
200 |
ccactacatcagccaccatctccaactt |
227 |
Q |
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| T |
956992 |
ccgctacatcagccaccatctccaactt |
957019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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