View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5212_low_4 (Length: 414)
Name: NF5212_low_4
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 74 - 398
Target Start/End: Original strand, 34288365 - 34288690
Alignment:
| Q |
74 |
aatttaaaatgaaccctgaaatattagacaaacaaaaaacccttacttccaaatgttcagggcaagtatatggattgaatgactacaaaaatgagataaa |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34288365 |
aatttaaaatgaaccctgaaatattagacaaacaaaaaacccttacttccaaatgttcagggcaagtatatggattgaatgactacaaaaatgagataaa |
34288464 |
T |
|
| Q |
174 |
aaagcagagaagtttcccagccttacttcccaacataagacaaacttggaaggcttgtggccatggaaacatcctgaccctgacatgtatctcaggtaca |
273 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34288465 |
aaagcagagaagattcccagccttacttcccaacataagacatacttggaaggcttgtggccatggaaacatcctgaccctgacatgtatctcaggtaca |
34288564 |
T |
|
| Q |
274 |
agtaccaagagtttatgaaattctttgatattta-tttttgagttttctatgaagtatccctcgttatgttgtttggtccaattcaacatctccaatcct |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34288565 |
agtaccaagagtttatgaaattctttgatatttattttttgagttttctatgaagtatccctcgttatgttgtttggtccaattcaacatctccaatcct |
34288664 |
T |
|
| Q |
373 |
tgtgatgccacctgtaaaacaaatat |
398 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
34288665 |
tgtgatgccacctgtaaaacaaatat |
34288690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 34287976 - 34288047
Alignment:
| Q |
11 |
agaatatgtaaaggactagttcgaatacacaccagaaaaaaggaaaaggtttagacttgagagaatttaaaa |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
34287976 |
agaatatgtaaaggactagttcgaatacacaccagaaaaaaggaaaaggttgagacttgatagaatttaaaa |
34288047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 34561686 - 34561751
Alignment:
| Q |
105 |
acaaaaaacccttacttccaaatgttcagggcaagtatatggattgaatgactacaaaaatgagat |
170 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
34561686 |
acaaaaaatacttacttccaaatgttcaggataagtatatggattgaatgactgcaaaaaggagat |
34561751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 393
Target Start/End: Complemental strand, 34376066 - 34375956
Alignment:
| Q |
283 |
agtttatgaaattctttgatatttatttttgagttttctatgaagtatccctcgttatgttgtttggtccaattcaacatctccaatccttgtgatgcca |
382 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||||||| || |||||||| || ||||| ||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
34376066 |
agttcatgacattctttgatacttatttttgagtttttgataaagtatccttcattatgcaacatggtccagctcaacatcttcgatccttgtgatgcca |
34375967 |
T |
|
| Q |
383 |
cctgtaaaaca |
393 |
Q |
| |
|
||||| ||||| |
|
|
| T |
34375966 |
cctgtgaaaca |
34375956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 15892157 - 15892265
Alignment:
| Q |
285 |
tttatgaaattctttgatatttatttttgagttttctatgaagtatccctcgttatgttgtttggtccaattcaacatctccaatccttgtgatgccacc |
384 |
Q |
| |
|
|||||||||| ||||||| ||| |||| ||||| | || || ||||| || |||||| |||||||||| ||||||||| | ||||||||||| || ||| |
|
|
| T |
15892157 |
tttatgaaatgctttgatgtttgttttagagttcttaatcaaatatccttcattatgtagtttggtccagttcaacatcacgaatccttgtgacgctacc |
15892256 |
T |
|
| Q |
385 |
tgtaaaaca |
393 |
Q |
| |
|
|| |||||| |
|
|
| T |
15892257 |
tgcaaaaca |
15892265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University