View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213-Insertion-10 (Length: 319)
Name: NF5213-Insertion-10
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213-Insertion-10 |
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Alignment Details
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 6384407 - 6384355
Alignment:
| Q |
8 |
gaaacaagcttatggcatgtataagctctcaaaaaatagcttatgcataaaca |
60 |
Q |
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| T |
6384407 |
gaaacaagcttatggcatgtataagctctcaaaaaatagcttatgcataaaca |
6384355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 29286665 - 29286625
Alignment:
| Q |
14 |
agcttatggcatgtataagctctcaaaaaatagcttatgca |
54 |
Q |
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| T |
29286665 |
agcttatggcatgtataacctctcaaaaaatagcttatgca |
29286625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 6384233 - 6384195
Alignment:
| Q |
153 |
tttatgataatggatgcaataaaccgaaaaataaaaatc |
191 |
Q |
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| T |
6384233 |
tttatgataatggatgcaataaacagaaaaataaaaatc |
6384195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 29286512 - 29286478
Alignment:
| Q |
209 |
tggagaatgaaaagaagaaggaagaaacctgaatt |
243 |
Q |
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| T |
29286512 |
tggagaatgaaaagacgaaggaagaaacctgaatt |
29286478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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