View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213-Insertion-3 (Length: 666)
Name: NF5213-Insertion-3
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 4 - 666
Target Start/End: Complemental strand, 44393697 - 44393029
Alignment:
| Q |
4 |
aacattactctgtttcttctctgttttcactctgtttttctctgtttcagctttcaagcacaagcaaaactacaacctctacattttcaagaaccagaaa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393697 |
aacattactctgtttcttctctgttttcactctgtttttctctgtttcagctttcaagcacaagcaaaactacaacctctacattttcaagaaccagaaa |
44393598 |
T |
|
| Q |
104 |
gccttcaatctctgcaatttcactcaagccaatcttctcactgatcctagcactacctcct------atacggtaagacccttcaaattgcataatggtt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
44393597 |
gccttcaatctctgcaatttcactcaagccaatcttctcactgatcctagcactacctcctgctcctatacggtaagacccttcaaattgcatcatggtt |
44393498 |
T |
|
| Q |
198 |
ctttaaaaacagctcaaaaattcattatttttcatattttgagttcttcagaaatatactatcaaattttcttaaaccaatttcctttcattttttcagt |
297 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393497 |
ctttaaaaacagctcaaaaattaattatttttcatattttgagttcttcagaaatatactatcaaattttcttaaaccaatttcctttcattttttcagt |
44393398 |
T |
|
| Q |
298 |
ggcacccttctcgtgttggtttcttctacttcaccttctccaatgactcactcaaagcctgtcaagattctcagaagctagccataaaggtaactccaac |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393397 |
ggcacccttctcgtgttggtttcttctacttcaccttctccaatgactcactcaaagcctgtcaagattctcagaagctagccataaaggtaactccaac |
44393298 |
T |
|
| Q |
398 |
aaaagcttcagcaccagaagcttcttcaccaatgccaactactccaggtccttcttctggtggagatatacaatcttctccttcatttccatggccattt |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393297 |
aaaagcttcagcaccagaagcttcttcaccaatgccaactactccaggtccttcttctggtggagatatacaatcttctccttcatttccatggccattt |
44393198 |
T |
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| Q |
498 |
catcctcaacaaggttcttcaccaggtccagcaccaacaccagaagcaagttcaccaataacagttccattagtaccatataaaggcagtggtgatggca |
597 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393197 |
catcctcaccaaggttcttcaccaggtccagcaccaacaccagaagcaagttcaccaataacagttccattagtaccatataaaggcagtggtgatggca |
44393098 |
T |
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| Q |
598 |
tgcctttcattaacagtaaccctgcagttcctctgcctactggtgaagttgattctgctactatacacc |
666 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393097 |
tgcctttcattaacagtaaccctgcagttcctctgcctactggtgaagttgattctgctactatacacc |
44393029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 40713252 - 40713352
Alignment:
| Q |
102 |
aagccttcaatctctgcaatttcactcaagccaatcttctcactgatcctagcactacctcctatacggtaagacccttcaaattgcataatggttcttt |
201 |
Q |
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|||||||||||||| |||||||| ||||||||| | ||||| | || | |||||||||||| || ||||||||||||||||| |||| ||||||| |
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| T |
40713252 |
aagccttcaatctc---aatttcacgcaagccaatatgctcaccaaccccaacactacctcctacactgtaagacccttcaaatttcatacgggttcttg |
40713348 |
T |
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| Q |
202 |
aaaa |
205 |
Q |
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|||| |
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| T |
40713349 |
aaaa |
40713352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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