View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5213-Insertion-4 (Length: 578)

Name: NF5213-Insertion-4
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5213-Insertion-4
NF5213-Insertion-4
[»] chr5 (5 HSPs)
chr5 (8-578)||(13484209-13484779)
chr5 (193-247)||(17145352-17145406)
chr5 (192-264)||(9123832-9123904)
chr5 (192-264)||(18391602-18391674)
chr5 (192-239)||(2001982-2002029)
[»] chr4 (12 HSPs)
chr4 (192-237)||(7922264-7922309)
chr4 (192-264)||(19854567-19854639)
chr4 (192-264)||(19908694-19908766)
chr4 (195-239)||(33900736-33900780)
chr4 (195-261)||(24488427-24488493)
chr4 (203-261)||(47806246-47806304)
chr4 (195-264)||(10082407-10082476)
chr4 (192-245)||(11286787-11286840)
chr4 (216-260)||(9990292-9990336)
chr4 (192-232)||(10519137-10519177)
chr4 (200-264)||(12671735-12671799)
chr4 (212-264)||(16432944-16432996)
[»] chr3 (9 HSPs)
chr3 (195-264)||(38869505-38869574)
chr3 (194-237)||(13992675-13992718)
chr3 (192-239)||(17588364-17588411)
chr3 (192-234)||(47377366-47377408)
chr3 (192-237)||(8113576-8113621)
chr3 (193-238)||(31138420-31138465)
chr3 (192-245)||(43334518-43334571)
chr3 (192-264)||(5702166-5702236)
chr3 (192-264)||(26768403-26768475)
[»] chr2 (13 HSPs)
chr2 (192-264)||(18324881-18324953)
chr2 (192-264)||(24393247-24393319)
chr2 (192-239)||(27934869-27934916)
chr2 (192-234)||(7413206-7413248)
chr2 (192-238)||(9459070-9459116)
chr2 (192-234)||(37320534-37320576)
chr2 (192-233)||(40896527-40896568)
chr2 (192-229)||(44926423-44926460)
chr2 (192-241)||(45032695-45032744)
chr2 (216-264)||(3503000-3503048)
chr2 (200-264)||(12124555-12124619)
chr2 (214-254)||(19549460-19549500)
chr2 (192-264)||(34903519-34903591)
[»] chr7 (11 HSPs)
chr7 (192-238)||(34885876-34885922)
chr7 (192-264)||(5458058-5458130)
chr7 (192-240)||(8683072-8683120)
chr7 (192-247)||(5352331-5352386)
chr7 (191-234)||(12288372-12288415)
chr7 (193-264)||(32896451-32896522)
chr7 (192-229)||(37930046-37930083)
chr7 (192-241)||(48980489-48980538)
chr7 (192-236)||(24991783-24991827)
chr7 (192-228)||(34607010-34607046)
chr7 (192-232)||(37240097-37240137)
[»] chr8 (9 HSPs)
chr8 (195-264)||(1244692-1244761)
chr8 (192-264)||(17704015-17704087)
chr8 (192-264)||(33445572-33445644)
chr8 (211-261)||(5880974-5881024)
chr8 (191-241)||(8442497-8442547)
chr8 (192-258)||(30623295-30623361)
chr8 (192-237)||(13286133-13286178)
chr8 (192-264)||(27750891-27750963)
chr8 (192-264)||(44293577-44293649)
[»] chr6 (2 HSPs)
chr6 (192-236)||(26522474-26522518)
chr6 (192-234)||(788868-788910)
[»] chr1 (3 HSPs)
chr1 (195-234)||(15764037-15764076)
chr1 (192-241)||(28039870-28039919)
chr1 (192-264)||(40227831-40227903)
[»] scaffold0007 (1 HSPs)
scaffold0007 (196-245)||(202594-202643)
[»] scaffold0197 (1 HSPs)
scaffold0197 (192-264)||(21742-21814)


Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Complemental strand, 13484779 - 13484209
Alignment:
Q  8 agcaatggcatgtataaatacttaccggttgttatatgaattaaaatcctgtcagaaatgnnnnnnnnnnnnnntcaagaacctagctatatacatgata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||    
T  13484779 agcaatggcatgtataaatacttaccggttgttatatgaattaaaatcctgtcagaaatgaaaaaaaataaaaatcaagaacctagctatatacatgata 13484680  T
Q  108 taatacacaaaagttaaattattttgcacttacaatttaaaaaagtttgcatatgtatccgttaattaaaaaatttgttttcacgagcttatctcagttg 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484679 taatacacaaaagttaaattatttttcacttacaatttaaaaaagtttgcatatgtatccgttaattaaaaaatttgttttcacgagcttatctcagttg 13484580  T
Q  208 gtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaattttcaaaatatttacgtaacaaattataatatttagattcat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484579 gtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaattttcaaaatatttacgtaacaaattataatatttagattcat 13484480  T
Q  308 ttataattgttggtagatattcatttataatatgggtaaatttgagtaaatacgttttacacaaagggaagaataagattgcatgaaagtatatgtgtat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484479 ttataattgttggtagatattcatttataatatgggtaaatttgagtaaatacgttttacacaaagggaagaataagattgcatgaaagtatatgtgtat 13484380  T
Q  408 agatatacgtgaggaatgaaggagtaaagaggtagtagcataaaataatgcaaatcttttaacacatttgtggggtctaagttctttcgagctaacaatg 507  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484379 agatatacgtgaggaatgaaggagtaaagagatagtagcataaaataatgcaaatcttttaacacatttgtggggtctaagttctttcgagctaacaatg 13484280  T
Q  508 aaagggaagaataaagacgacaaacaagcaacaaaatcaacattcactcactcactgctttggttttcctc 578  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  13484279 aaagggaagaataaagacgacaaacaagcaacaaaatcaacactcactcactcactgctttgcttttcctc 13484209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 17145406 - 17145352
Alignment:
Q  193 agcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcga 247  Q
    |||||| |||||||||| ||||||||| ||||||||| ||||||||||| |||||    
T  17145406 agcttaactcagttggtaaagacaatgtataatatatgcaagatctgaggttcga 17145352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 9123904 - 9123832
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| |||||||||| |||||||||||||||||||  |||||| ||  ||||| ||||  ||||||||||    
T  9123904 gagcttaactcagttggtaaagacaatgcataatatatgtaagatccgaagttcgaacctcagacaccacaaa 9123832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 18391602 - 18391674
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| |||||||||| | |||||||||||| |||| |||| || ||| ||||| |||||| |||||||||    
T  18391602 gagcttagctcagttggtaaggacaatgcataaaatatgcaaggtccgaggttcgaacctcgaccaccacaaa 18391674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 2001982 - 2002029
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctg 239  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||||    
T  2001982 gagcttatttcagttggtaaagacattgcataatatatacaaggtctg 2002029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 7922309 - 7922264
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatc 237  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
T  7922309 gagcttatctcagttggtaaagacaatgcataatatatgcaagatc 7922264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 19854567 - 19854639
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| ||||||||||   ||||||||||||||||| ||||||| | | ||||| ||||| ||||||||||    
T  19854567 gagcttagctcagttggtatggacaatgcataatatatgcaagatccggggttcgaacctcggacaccacaaa 19854639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 19908694 - 19908766
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| || ||| ||||| || ||| |||||||||    
T  19908694 gagcttaactcagttggtaaggacaatgcataatatatgcaaggtccgaggttcgaaccccgaccaccacaaa 19908766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 33900780 - 33900736
Alignment:
Q  195 cttatctcagttggtgaagacaatgcataatatatacaagatctg 239  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||    
T  33900780 cttatctcagttggtaaggacaatgcataatatatgcaagatctg 33900736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 24488427 - 24488493
Alignment:
Q  195 cttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccac 261  Q
    |||| |||||||||| | |||||||||||||||||||||| |  |||||| || ||||| |||||||    
T  24488427 cttaactcagttggtaatgacaatgcataatatatacaaggttcgagatttgaacctcggacaccac 24488493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 47806304 - 47806246
Alignment:
Q  203 agttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccac 261  Q
    ||||||||| ||||||||||||||||| |||| |||| | ||||| || ||||||||||    
T  47806304 agttggtgaggacaatgcataatatatgcaaggtctggggttcgaaccccgaacaccac 47806246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 10082407 - 10082476
Alignment:
Q  195 cttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    |||| ||||||||||   |||||| ||||||||||||||||| |||| ||| | |||||| |||||||||    
T  10082407 cttagctcagttggtagggacaatacataatatatacaagatatgaggttcaaacctcgaccaccacaaa 10082476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 11286840 - 11286787
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattc 245  Q
    |||||||  |||||||||  |||||||||||||||||| |||| ||||||||||    
T  11286840 gagcttagttcagttggtagagacaatgcataatatatgcaaggtctgagattc 11286787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 9990292 - 9990336
Alignment:
Q  216 aatgcataatatatacaagatctgagattcgatcctcgaacacca 260  Q
    |||||||||||||| ||||||||||| ||||| ||||| ||||||    
T  9990292 aatgcataatatatgcaagatctgaggttcgaacctcggacacca 9990336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 10519137 - 10519177
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatataca 232  Q
    ||||||| ||||||||||  |||||||||||||||||||||    
T  10519137 gagcttagctcagttggtatagacaatgcataatatataca 10519177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 12671799 - 12671735
Alignment:
Q  200 ctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||||||  ||||||||||||| |||| ||||||| | | ||||| |||||| |||||||||    
T  12671799 ctcagttggtatagacaatgcataaaatatgcaagatccggggttcgaacctcgaccaccacaaa 12671735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 16432996 - 16432944
Alignment:
Q  212 agacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||||||||||||||| |||||||||| ||| | || ||| |||||||||    
T  16432996 agacaatgcataatatatataagatctgaggttcaaaccccgaccaccacaaa 16432944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 38869574 - 38869505
Alignment:
Q  195 cttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    |||| |||||||||| |  |||||||||||||||||||||||| ||| |||||  |||||||||||||||    
T  38869574 cttagctcagttggtaagaacaatgcataatatatacaagatccgaggttcgaaactcgaacaccacaaa 38869505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 13992675 - 13992718
Alignment:
Q  194 gcttatctcagttggtgaagacaatgcataatatatacaagatc 237  Q
    ||||| |||||||||| | |||||||||||||||||||||||||    
T  13992675 gcttagctcagttggtaaggacaatgcataatatatacaagatc 13992718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 17588364 - 17588411
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctg 239  Q
    ||||||| |||||||||| | ||||||||||||||||| |||||||||    
T  17588364 gagcttaactcagttggtaaggacaatgcataatatatgcaagatctg 17588411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 47377408 - 47377366
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaag 234  Q
    ||||||| |||||||||| | ||||||||||||||||||||||    
T  47377408 gagcttaactcagttggtaaggacaatgcataatatatacaag 47377366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 8113621 - 8113576
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatc 237  Q
    ||||||| |||||||||| | ||||||||||||||||| |||||||    
T  8113621 gagcttagctcagttggtaaggacaatgcataatatatgcaagatc 8113576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 31138420 - 31138465
Alignment:
Q  193 agcttatctcagttggtgaagacaatgcataatatatacaagatct 238  Q
    ||||||||||||||| |  |||||||||||||||||| ||||||||    
T  31138420 agcttatctcagttgatagagacaatgcataatatatgcaagatct 31138465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 43334571 - 43334518
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattc 245  Q
    ||||||| ||||| |||| | ||| |||||||||||||||||| ||||||||||    
T  43334571 gagcttaactcagctggtaaggaccatgcataatatatacaaggtctgagattc 43334518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 5702236 - 5702166
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| |||||||||| ||||||||||||||||||| |||| | |||| ||||| ||| | ||||||||||    
T  5702236 gagcttagctcagttggt-aagacaatgcataatatatgcaaggtttgaggttcgaacct-ggacaccacaaa 5702166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 26768403 - 26768475
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||||||||| ||||  ||||||||||||| |||| |||| |||||| ||| | || ||| |||||||||    
T  26768403 gagcttatctcagctggtatagacaatgcataaaatatgcaaggtctgagcttcaaaccccgaccaccacaaa 26768475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 18324953 - 18324881
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||||  ||||||| ||  ||||||||||||    
T  18324953 gagcttaactcagttggtaaggacaatgcataatatatgcaagatctaggattcgaaccctgaacaccacaaa 18324881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 24393247 - 24393319
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| |||||||| | | ||||||||||||||||| |||| |||||| ||||| || || ||||||||||    
T  24393247 gagcttagctcagttgttaaggacaatgcataatatatgcaaggtctgaggttcgaaccccggacaccacaaa 24393319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 27934916 - 27934869
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctg 239  Q
    ||||||| |||||||||| | |||||| ||||||||||||||||||||    
T  27934916 gagcttagctcagttggtaaggacaatacataatatatacaagatctg 27934869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 7413248 - 7413206
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaag 234  Q
    ||||||| |||||||||| | ||||||||||||||||||||||    
T  7413248 gagcttagctcagttggtaaggacaatgcataatatatacaag 7413206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 9459116 - 9459070
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatct 238  Q
    ||||||| |||||||| | ||||||||||||||||||||||| ||||    
T  9459116 gagcttagctcagttgataaagacaatgcataatatatacaaaatct 9459070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 37320576 - 37320534
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaag 234  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||    
T  37320576 gagcttaactcagttggtaaagacaatgcataatatatgcaag 37320534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 40896568 - 40896527
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaa 233  Q
    ||||||| ||||||||||  ||||||||||||||||||||||    
T  40896568 gagcttagctcagttggtatagacaatgcataatatatacaa 40896527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 44926460 - 44926423
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatat 229  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  44926460 gagcttatctcagttggtaaagacaatgcattatatat 44926423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 45032695 - 45032744
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgag 241  Q
    ||||||| ||||||||||   ||||||||||||||||| |||||||||||    
T  45032695 gagcttacctcagttggtagggacaatgcataatatatgcaagatctgag 45032744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 3503000 - 3503048
Alignment:
Q  216 aatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    |||||||||||||| |||| |||||||||||| ||  ||||||||||||    
T  3503000 aatgcataatatatgcaaggtctgagattcgaaccctgaacaccacaaa 3503048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 12124555 - 12124619
Alignment:
Q  200 ctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    |||||||||| | ||||||||||||||||| |||| || | | ||||| |||| |||||||||||    
T  12124555 ctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaacctcaaacaccacaaa 12124619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 19549460 - 19549500
Alignment:
Q  214 acaatgcataatatatacaagatctgagattcgatcctcga 254  Q
    |||||||||||||||| |||| |||||||||||| ||||||    
T  19549460 acaatgcataatatatgcaaggtctgagattcgaacctcga 19549500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 34903519 - 34903591
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    |||||||  ||||||||| | |||| |||||||||||| |||| |||||| ||||| || || ||||||||||    
T  34903519 gagcttagttcagttggtaaggacagtgcataatatatgcaaggtctgaggttcgaaccccggacaccacaaa 34903591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 34885876 - 34885922
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatct 238  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  34885876 gagcttagctcagttggtgaagacaatgcatgatatatgcaagatct 34885922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 5458130 - 5458058
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| |||||||| | |  |||||||||||||||| |||| |||| ||||| | ||||||||||||||||    
T  5458130 gagcttagctcagttgataagaacaatgcataatatatgcaaggtctgggattcaaacctcgaacaccacaaa 5458058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 8683072 - 8683120
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctga 240  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||||||||    
T  8683072 gagcttagctcagttggtatagacaatgcataatatatgcaagatctga 8683120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 5352331 - 5352386
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcga 247  Q
    ||||||| |||||||||| | |||||| ||||||||||||||| || |||||||||    
T  5352331 gagcttagctcagttggtaaggacaatacataatatatacaaggtccgagattcga 5352386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 12288372 - 12288415
Alignment:
Q  191 cgagcttatctcagttggtgaagacaatgcataatatatacaag 234  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||    
T  12288372 cgagcttaactcagttggtgaggacaatgcataatgtatacaag 12288415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 32896522 - 32896451
Alignment:
Q  193 agcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    |||||| |||||||||  | |||||||||||||||||||||||| || | ||||| ||||  ||||||||||    
T  32896522 agcttaactcagttgggaaggacaatgcataatatatacaagatttggggttcgaacctcagacaccacaaa 32896451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 37930046 - 37930083
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatat 229  Q
    |||||||||||||||||| | |||||||||||||||||    
T  37930046 gagcttatctcagttggtaaggacaatgcataatatat 37930083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 48980489 - 48980538
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgag 241  Q
    ||||||| ||||||||||   ||||||||||||||||||||| |||||||    
T  48980489 gagcttagctcagttggtatggacaatgcataatatatacaatatctgag 48980538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 24991783 - 24991827
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagat 236  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||    
T  24991783 gagcttagctcagttggtaaggacaatgcataatatatgcaagat 24991827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 34607046 - 34607010
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatata 228  Q
    |||||||||||||||||| |||| |||||||||||||    
T  34607046 gagcttatctcagttggtaaagataatgcataatata 34607010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 37240137 - 37240097
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatataca 232  Q
    ||||||| |||||||||| |||||| |||||||||||||||    
T  37240137 gagcttaactcagttggtaaagacattgcataatatataca 37240097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 1244761 - 1244692
Alignment:
Q  195 cttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    |||| |||||||||| | |||||||||||||||||||||| |||| | ||||| || || ||||||||||    
T  1244761 cttagctcagttggtaaggacaatgcataatatatacaaggtctggggttcgaaccccggacaccacaaa 1244692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 17704015 - 17704087
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| |||| ||||| | |||||  |||||||||    
T  17704015 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtctgtgattcaaacctcggccaccacaaa 17704087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 33445572 - 33445644
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| ||||||||||    ||||||||||||||||||||| | |||||||||| ||||  ||||||||||    
T  33445572 gagcttagctcagttggtaggaacaatgcataatatatacaaggtttgagattcgaacctcagacaccacaaa 33445644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 5881024 - 5880974
Alignment:
Q  211 aagacaatgcataatatatacaagatctgagattcgatcctcgaacaccac 261  Q
    |||||||||||||||||||||||| | |||||||| | |||| ||||||||    
T  5881024 aagacaatgcataatatatacaaggtttgagattcaaacctcaaacaccac 5880974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 8442547 - 8442497
Alignment:
Q  191 cgagcttatctcagttggtgaagacaatgcataatatatacaagatctgag 241  Q
    |||||||| |||||||||| | ||||||||||||||||| |||| ||||||    
T  8442547 cgagcttaactcagttggtaaggacaatgcataatatatgcaaggtctgag 8442497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 30623295 - 30623361
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacac 258  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| |||| | ||||| || |||||||    
T  30623295 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaaccccgaacac 30623361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 13286133 - 13286178
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatc 237  Q
    ||||||| ||||||||||  |||||||||||||||||| |||||||    
T  13286133 gagcttagctcagttggtatagacaatgcataatatatgcaagatc 13286178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 27750963 - 27750891
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| |||||||||| | |||| |||||||||||| |||| || | | ||||| |||||||||| |||||    
T  27750963 gagcttagctcagttggtaaggacagtgcataatatatgcaaggtccggggttcgaacctcgaacactacaaa 27750891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 44293577 - 44293649
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| ||||||||||  ||||||||||||||||||  |||||||| | ||||| ||  || |||||||||    
T  44293577 gagcttagctcagttggtatagacaatgcataatatatgtaagatctggggttcgaaccctgaccaccacaaa 44293649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 26522474 - 26522518
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagat 236  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||    
T  26522474 gagcttagctcagttggtaaggacaatgcataatatatacaagat 26522518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 788868 - 788910
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaag 234  Q
    |||||||||||||||||| | ||||||||||||||||| ||||    
T  788868 gagcttatctcagttggtaaggacaatgcataatatatgcaag 788910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 15764037 - 15764076
Alignment:
Q  195 cttatctcagttggtgaagacaatgcataatatatacaag 234  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  15764037 cttatctcagttggtaaggacaatgcataatatatacaag 15764076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 28039919 - 28039870
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgag 241  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| ||||||    
T  28039919 gagcttaactcagttggtaaggacaatgcataatatatgcaaggtctgag 28039870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 40227831 - 40227903
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| ||||||||||   |||||||||||| ||||||||| |||| | ||||| || ||| |||||||||    
T  40227831 gagcttagctcagttggtatggacaatgcataaaatatacaaggtctggggttcgaaccccgaccaccacaaa 40227903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 202594 - 202643
Alignment:
Q  196 ttatctcagttggtgaagacaatgcataatatatacaagatctgagattc 245  Q
    ||||||||||| || ||||| |||||||||||||| ||| ||||||||||    
T  202594 ttatctcagttagttaagacgatgcataatatatataaggtctgagattc 202643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 21814 - 21742
Alignment:
Q  192 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 264  Q
    ||||||| ||||||||||  ||||||||||||| ||||||||| | |||| ||| |  ||||| |||||||||    
T  21814 gagcttagctcagttggtatagacaatgcataaaatatacaaggtatgaggttcaaatctcgaccaccacaaa 21742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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