View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5213-Insertion-6 (Length: 484)
Name: NF5213-Insertion-6
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213-Insertion-6 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 9 - 484
Target Start/End: Original strand, 25154022 - 25154497
Alignment:
| Q |
9 |
caacaacatggccctagagatacgcctccccctaaaccaccaaaacaaaacaaaaacatgactaaaagcgcccagctatgataagggaagaacagaaaac |
108 |
Q |
| |
|
||||| |||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
25154022 |
caacagcatggccctagaaatatgcctcctcctaagccaccaaaacaaaacaaaaacatgactaaaagcgcccagctatgacaaaagaagaacaaaaaac |
25154121 |
T |
|
| Q |
109 |
ataattggttaagccc-tccaagaccaaaggtgttaaggatttgtnnnnnnnnnn-caccacttcttcatattcatatgaaatccatcaacattcataca |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25154122 |
ataattggttaagcccctccaagaccaaaggtaataaggctttgtaaaaaaaaaaacaccacttcttcatattcatatgaaatccatcaacattcataca |
25154221 |
T |
|
| Q |
207 |
atataccttaaaagaattcaagaaaaaatccaatatttaaccaacaaataaaattcagattcatcaattcatcccttcaacatcatgaattcatggtttc |
306 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
25154222 |
atataccttaaaaaaattcaagaaaaaatccaatatttaaccaacaaataaaattcagattcatcaattcatcccttcagcatcatgaattcatggcttc |
25154321 |
T |
|
| Q |
307 |
cacggattcaacatcaattagaacccgaatttgaacaagagagaatataatttgaaggatctgaaattagtgtcttcttaaattacaccaccattcttat |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
25154322 |
cacggattcaacatcaattagaacccgaatttgaacaagagagaatataatttgaaggatctgaaattagtgttttcttaaattacaccaccatttttat |
25154421 |
T |
|
| Q |
407 |
aatttgaaagttctggaattgagtttaggttagaattttgggaattagggcttcgaattatgggttctgtctattgtc |
484 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25154422 |
aatttg-aagttctggaattgagtttgggttagaattttgggaattagggcttcgaattat-ggttctgtctattgtc |
25154497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 25532378 - 25532418
Alignment:
| Q |
164 |
accacttcttcatattcatatgaaatccatcaacattcata |
204 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
25532378 |
accacttcttcatattcataccaaattcatcaacattcata |
25532418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 39 - 484
Target Start/End: Original strand, 27410192 - 27410641
Alignment:
| Q |
39 |
cctaaaccaccaaaacaaaacaaaaacatgactaaaagcgcccagctatgataagggaagaacagaaaacataattggttaag-ccctccaagaccaaag |
137 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
27410192 |
cctaagccaccaaaacaaaacaaaaacatgactaaaagcgcccagcaatgacaagggaagaacataaaacataattggttaaatccctccaagaccaaag |
27410291 |
T |
|
| Q |
138 |
gtgttaa-------ggatttgtnnnnnnnnnncaccacttcttcatattcatatgaaatccatcaacattcatacaatataccttaaaagaattcaagaa |
230 |
Q |
| |
|
||||||| || ||||| ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
27410292 |
gtgttaactgctaaggctttgtaaaaaaaaa-caccatttattcatattcatatgaaatccatcaatattcatacaatataccttaaaa-aattccagaa |
27410389 |
T |
|
| Q |
231 |
aaaatccaatatttaaccaacaaataaaattcagattcatcaattcatcccttcaacatcatgaattcatggtttccacggattcaacatcaattagaac |
330 |
Q |
| |
|
||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
27410390 |
aaa-tcaaatatttaaccaacacataaaattcagattcatcaattcatcccttcaacatcatgaattcctggcttccacgaattcaacatcaattagaac |
27410488 |
T |
|
| Q |
331 |
ccgaatttgaacaagagagaatataatttgaaggatctgaaattagtgtcttcttaaattacaccaccattcttataatttgaaagttctggaattgagt |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
27410489 |
ccgaatttgaacaagagagaatataatttgaaggatctaaaattagtttcttcttaaattacaccacaattcttataatttgaaggttctggaattgagt |
27410588 |
T |
|
| Q |
431 |
ttaggttagaattttgggaattagggcttcgaattatgggttctgtctattgtc |
484 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27410589 |
ttgggttagaattttgggaattagggctt-gaattatgggttctgtctattgtc |
27410641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 96525 - 96852
Alignment:
| Q |
8 |
ccaacaacatggccctagagatacgcctccccctaaaccaccaaaacaaaacaaaaacatgactaaaagcgcccagctatgataagggaagaacagaaaa |
107 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | || | ||||||||||||||||| |
|
|
| T |
96525 |
ccaacaacatggccatagaaatacacctccccctaagccaccaaaacaaaacaaaaacatgactaaaagcgcccaacaataacaagggaagaacagaaaa |
96624 |
T |
|
| Q |
108 |
cataattggttaagccc-tccaagaccaaaggtgttaaggatttgtnnnnnnnnnncaccacttcttcatattcatatgaaatccatcaacattcataca |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
96625 |
cataattggttaagcccctccaagaccaaaggtgttaaggctttgtaaaaaaaa--caccacttcttcatattcatatgaaatccatcaacattcataca |
96722 |
T |
|
| Q |
207 |
atataccttaaaagaattcaagaaaaaatccaatatttaaccaacaaataaaattcagattcatcaattcatcccttcaacatcatgaattcatggtttc |
306 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
96723 |
atataccttaaaaaaattcaagaaaa-atccaatatttaaccaacaaataaaattcagattcatcaattcatcccttcaacatcatgaattcatggcttc |
96821 |
T |
|
| Q |
307 |
cacggattcaacatcaattagaacccgaatt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
96822 |
cacggattcaacatcaattagaacccgaatt |
96852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 173 - 319
Target Start/End: Complemental strand, 37473691 - 37473543
Alignment:
| Q |
173 |
tcatattcatatgaaatccatcaacattcatacaatataccttaaaagaattcaagaaaaaatccaatatttaaccaacaaataaaattcagattca--- |
269 |
Q |
| |
|
||||||||||||||| | |||||||||| ||||||||||| |||| ||||| ||||||||| ||| ||||||||| ||||||||| || ||||| |
|
|
| T |
37473691 |
tcatattcatatgaacttcatcaacatttatacaatatacaagaaaaaaattccagaaaaaattcaacatttaacca-caaataaaacccaaattcaaca |
37473593 |
T |
|
| Q |
270 |
tcaattcatcccttcaacatcatgaattcatggtttccacggattcaaca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37473592 |
tcaattcatcccttcaacatcatgaattcatggcttccacggattcaaca |
37473543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 37275121 - 37275171
Alignment:
| Q |
163 |
caccacttcttcatattcatatgaaatccatcaacattcatacaatatacc |
213 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||| |||||||||| |
|
|
| T |
37275121 |
caccacttcttcatattcatacaaaattcatcaatattcacacaatatacc |
37275171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 34616369 - 34616414
Alignment:
| Q |
164 |
accacttcttcatattcatatgaaatccatcaacattcatacaata |
209 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
34616369 |
accacttcttcatattcataccaaattcatcaatattcatacaata |
34616414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 37323513 - 37323558
Alignment:
| Q |
164 |
accacttcttcatattcatatgaaatccatcaacattcatacaata |
209 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
37323513 |
accacttcttcacattcataccaaattcatcaacattcatacaata |
37323558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 45542858 - 45542826
Alignment:
| Q |
268 |
catcaattcatcccttcaacatcatgaattcat |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
45542858 |
catcaattcaccccttcaacatcatgaattcat |
45542826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 31810220 - 31810323
Alignment:
| Q |
37 |
cccctaaaccaccaaaacaaaacaaaaacatgactaaaagcgcccagctatgataagggaagaacagaaaacataattggttaag-ccctccaagaccaa |
135 |
Q |
| |
|
||||||| ||||||| || ||||| ||||| | ||||||| ||||||||| || ||||||||||||||||||| ||||||||||| |||||||||||| | |
|
|
| T |
31810220 |
cccctaagccaccaagactaaacagaaacagggctaaaagtgcccagctaggacaagggaagaacagaaaacaaaattggttaagcccctccaagaccca |
31810319 |
T |
|
| Q |
136 |
aggt |
139 |
Q |
| |
|
|||| |
|
|
| T |
31810320 |
aggt |
31810323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 15857509 - 15857464
Alignment:
| Q |
164 |
accacttcttcatattcatatgaaatccatcaacattcatacaata |
209 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
15857509 |
accacttcttcatattcataccaaattcatcaatattcatacaata |
15857464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 19524225 - 19524262
Alignment:
| Q |
173 |
tcatattcatatgaaatccatcaacattcatacaatat |
210 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
19524225 |
tcatattcatatgaaattcatcaacactcatacaatat |
19524262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 163 - 302
Target Start/End: Complemental strand, 14716076 - 14715937
Alignment:
| Q |
163 |
caccacttcttcatattcatatgaaatccatcaacattcatacaatataccttaaaagaattcaagaaaaaatccaatatttaaccaacaaataaaattc |
262 |
Q |
| |
|
||||| |||||||| |||||| |||| ||| |||||||||||||||||| ||| || || |||||||| ||| ||||||||||||||||||| || |
|
|
| T |
14716076 |
caccatttcttcatgttcatacaaaattcatacacattcatacaatatacc---aaaaaaatccagaaaaaaatcaacatttaaccaacaaataaaactc |
14715980 |
T |
|
| Q |
263 |
agattca---tcaattcatcccttcaacatcatgaattcatgg |
302 |
Q |
| |
|
| ||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
14715979 |
aaattcaacatcaattcatctcttcaacatcatgaattcatgg |
14715937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 40174645 - 40174599
Alignment:
| Q |
163 |
caccacttcttcatattcatatgaaatccatcaacattcatacaata |
209 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
40174645 |
caccacttcttcatattcataccaaattcatcaacattcatacaata |
40174599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 51299669 - 51299702
Alignment:
| Q |
268 |
catcaattcatcccttcaacatcatgaattcatg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
51299669 |
catcaattcatcccttcaacatcatgaattcatg |
51299702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 49140038 - 49140084
Alignment:
| Q |
163 |
caccacttcttcatattcatatgaaatccatcaacattcatacaata |
209 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||||||||| |||| |
|
|
| T |
49140038 |
caccacttcttcatattcatatcaaattcaccaacattcatataata |
49140084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 8372500 - 8372454
Alignment:
| Q |
163 |
caccacttcttcatattcatatgaaatccatcaacattcatacaata |
209 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
8372500 |
caccacttcttcatattcgtaccaaattcatcaacattcatacaata |
8372454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 22404 - 22437
Alignment:
| Q |
268 |
catcaattcatcccttcaacatcatgaattcatg |
301 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
22404 |
catcaattcaccccttcaacatcatgaattcatg |
22437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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