View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5213-Insertion-7 (Length: 423)
Name: NF5213-Insertion-7
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213-Insertion-7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 1415298 - 1415700
Alignment:
| Q |
20 |
atgttgatttgtatgatgataggtggaggagtggaggagcagagaagagcaaggtgaaagtgaggaggaaacttagagagccaaggttttgtttccagac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1415298 |
atgttgatttgtatgatgataggtggaggagtggaggagcagagaagagcaaggtgaaagtgaggaggaaacttagagagccaaggttttgtttccagac |
1415397 |
T |
|
| Q |
120 |
aagaagtgatgtagatgtgcttgatgatggttacaaatggaggaagtatggtcaaaaagttgtcaagaatagtcttcatccaaggtaattaatccttcat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1415398 |
aagaagtgatgtagatgtgcttgatgatggttacaaatggaggaagtatggtcaaaaagttgtcaagaatagtcttcatccaaggtaattaatccttcat |
1415497 |
T |
|
| Q |
220 |
tcatattattcttgcttatttaatctcttcattaaaaatatatttctatatttcaaatatgttatgattattacgtataatatataggttagtactaacc |
319 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
1415498 |
tcatattattcttgcttaattaatctcttcattaaaaatatatttctatatttcaaatatgttatgattatcacgtataatatataggttaatattaacc |
1415597 |
T |
|
| Q |
320 |
gtggttgatcggaagttgttgagtttcggttaaaattgtttgaaagaatatgaattgaacctcactaaaacaatcgttagtcagactttaaaattatacc |
419 |
Q |
| |
|
|||||| ||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1415598 |
acggttgaacggaagttgttaaatttcgattaaaattgtttgaaagaatctgaattgaacctcactaaaacgatcgttagtcagactttaaaattatacc |
1415697 |
T |
|
| Q |
420 |
aag |
422 |
Q |
| |
|
||| |
|
|
| T |
1415698 |
aag |
1415700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 38496084 - 38496022
Alignment:
| Q |
126 |
tgatgtagatgtgcttgatgatggttacaaatggaggaagtatggtcaaaaagttgtcaagaa |
188 |
Q |
| |
|
|||||| |||||| | |||||||||||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
38496084 |
tgatgtggatgtgttggatgatggttacaagtggaggaagtatggacaaaaagttgtaaagaa |
38496022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University