View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5213-Insertion-8 (Length: 393)

Name: NF5213-Insertion-8
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5213-Insertion-8
NF5213-Insertion-8
[»] chr3 (1 HSPs)
chr3 (16-386)||(42412122-42412492)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 386
Target Start/End: Complemental strand, 42412492 - 42412122
Alignment:
Q  16 gtcatgtgtcaaatatatactcttaattaacaaaaactcagcctcaatataacccaatatttacaattaattaaatcaaagtttacactnnnnnnntatg 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||    
T  42412492 gtcatgtgtcaaatatatactcttaattaacaacaactcagcctcaatataacccaatattcacaattaattaaatcaaagtttacactaaaaaaatatg 42412393  T
Q  116 aatttgtccacaagaaaaattgaaaattgagaatacttacagaaaattaaataaccaattaaacacaaaacaatattacaaaaacatcagcttgtacnnn 215  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  42412392 aatttgcacacaagaaaaattgaaaattgagaatacttacagaaaattaaataaccaattaaacacaaaacaatattacaaaaacatcagcttgtacaat 42412293  T
Q  216 nnnnnnnnnnnnnnnnnnnnngaaatagtacctttatagttgcattttctaagaagtgctgttataatctgtcttgtacaatcatcagcttcaaccaaaa 315  Q
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42412292 aaaataataataataataatagaaatagtacctttatagttgcattttctaagaagtgctgttataatctgtcttgtacaatcatcagcttcaaccaaaa 42412193  T
Q  316 gcaccctcaaaaccatttttggcaagaatttctcccacctcataagccctttcatttcaccaccaccacca 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42412192 gcaccctcaaaaccatttttggcaagaatttctcccacctcataagccctttcatttcaccaccaccacca 42412122  T

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