View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213-Insertion-9 (Length: 378)
Name: NF5213-Insertion-9
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213-Insertion-9 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 43463182 - 43462812
Alignment:
| Q |
8 |
cactccacacatcagcttctggcccataacactctcttataacctcaggtgccatataataaggacttcctaccgcatcactaaatttttctcctgcaaa |
107 |
Q |
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| T |
43463182 |
cactccacacatcagcttctggcccataacactctcttataacctcaggtgccatataataaggacttcctactgcatcactaaatttttctcctgcaat |
43463083 |
T |
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| Q |
108 |
agaagattgttagtcacaaagactatatatgatcattacagtaccaatagtaggtttcaagaaatggttggagattggtataaattggagaaggggatta |
207 |
Q |
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| T |
43463082 |
agaagattgttagtcacaaagactatatattatcattacagtaccaatagtaggtttcaagaaatggttagagattggtataaattggagaaggggatta |
43462983 |
T |
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| Q |
208 |
tttccatacctggtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatattcatgtccatcaacaaaaagaaaattttcaggcttaag |
307 |
Q |
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| T |
43462982 |
tttccatacctggtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatcttcatgtccatcaacaaaaagaaaattttcaggcttaag |
43462883 |
T |
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| Q |
308 |
atcacgatgcataactccacgtgagtgacaagtctcaacaacactaacaatagttcttgcaagtttagcgg |
378 |
Q |
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| T |
43462882 |
atcacaatgcataactccacgtgagtgacaagtctcaacaacactaacgatagttcttgcaagtttagcgg |
43462812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 170 - 376
Target Start/End: Complemental strand, 43453581 - 43453375
Alignment:
| Q |
170 |
aatggttggagattggtataaattggagaaggggattatttccatacctggtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatat |
269 |
Q |
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| T |
43453581 |
aatggttagagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaatcaattgccataagagtggaatct |
43453482 |
T |
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| Q |
270 |
tcatgtccatcaacaaaaagaaaattttcaggcttaagatcacgatgcataactccacgtgagtgacaagtctcaacaacactaacaatagttcttgcaa |
369 |
Q |
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| T |
43453481 |
tcatctccatcaacaaaaaggaaattttcaggcttaagatcacgatgcataactccacgtgagtgacaagcctcaacaacattaacaatcgttcttgcga |
43453382 |
T |
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| Q |
370 |
gtttagc |
376 |
Q |
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| T |
43453381 |
gtttagc |
43453375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 43454469 - 43454318
Alignment:
| Q |
8 |
cactccacacatcagcttctggcccataacactctcttataacctcaggtgccatataataaggacttcctaccgcatcactaaatttttctcctgcaaa |
107 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||| || ||||||||||||||| |||| ||| |
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| T |
43454469 |
cactccatacatcagcttctggcccataacactcttctataacctcaggtgcaacataataagcacttccgacaaaatcactaaatttttcccctgtaaa |
43454370 |
T |
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| Q |
108 |
agaagattgttagtcacaaagactatatatgatcattacagtaccaatagtaggt |
162 |
Q |
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| T |
43454369 |
agaagattgttagtaacaaagactatatatgatcattac---accaatagtaggt |
43454318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 373
Target Start/End: Original strand, 24420746 - 24420904
Alignment:
| Q |
215 |
acctggtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatattcatgtccatcaacaaaaagaaaattttcaggcttaagatcacga |
314 |
Q |
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| T |
24420746 |
acctggtttgaaaaaacaagataatccaaagtcgattgccttaaggggagattcttcctgctgattaacaaaaagaaaattctccggcttaagatcgcga |
24420845 |
T |
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| Q |
315 |
tgcataactccacgtgagtgacaagtctcaacaacactaacaatagttcttgcaagttt |
373 |
Q |
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| T |
24420846 |
tgcattacaccaagagaatgacatgactgaataacaccaacaatagtccttgcaagttt |
24420904 |
T |
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