View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_1 (Length: 870)
Name: NF5213_high_1
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 7095603 - 7095097
Alignment:
| Q |
1 |
atcatctgtattgaagatttgattcacgagatactgacagttggtcctcacttcagagaggcaaacaacttcctgtggcctttcaagctcaaagctcccc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7095603 |
atcatctgtattgaagatttgattcacgagatactgacagttggtcctcacttcagagaggcaaacaacttcctgtggcctttcaagctcaaagctcctc |
7095504 |
T |
|
| Q |
101 |
taggtggtatgaagaagaaaagaaatcattatgttgaaggtggtgatgctggaaacagggaagactacatcaacgaactcatcagaaggatgaattagtt |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7095503 |
taggtggtaggaagaagaaaagaaatcattatgttgaaggcggtgatgctggaaacagggaagactaaatcaacgaactcatcagaaggatgaattagtt |
7095404 |
T |
|
| Q |
201 |
tttggcatatcatgttgtgtaagattaattatcaagtttgagatat--ttttccttaagcaataagcattttgttcttatgttttacaacaatacaaatg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095403 |
tttggcatatcatgttgtgtaagattaattatcaaggttgagatattgttttccttaagcaataagcattttgttcttatgttttacaacaatacaaatg |
7095304 |
T |
|
| Q |
299 |
aagtagttttcatacttttttctctccccatccccaaaaccctactttcccttttactcctaatttccaaacagaacctaaagaaaattaagggtgtctg |
398 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095303 |
aagtagttttcattcttttttctctccccat-cccaaaaccctactttcccttttactcctaatttccaaacagaacctaaagaaaattaagggtgtctg |
7095205 |
T |
|
| Q |
399 |
tttctttcttgtggtttatgcaaatatatcaactatgtaattttgacatgatgaaagataaggaatgaaaatctcatacatgagtggtactgtgttaatt |
498 |
Q |
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| T |
7095204 |
tttctttcttgtggtttatgcaaatatatcaactatgtaattttgacatgatgaatgataaggaatgaaaatctcatacatgagtagtactgtgttaatt |
7095105 |
T |
|
| Q |
499 |
tgagaata |
506 |
Q |
| |
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|||||||| |
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| T |
7095104 |
tgagaata |
7095097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 506 - 870
Target Start/End: Complemental strand, 7095043 - 7094681
Alignment:
| Q |
506 |
agatttatatctttaagatttcatcctgcaggactaaaactattattaggatagttgagtgatatatatgatgtttatatagtaaatgtatgggacataa |
605 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095043 |
agatttatatctttaagatttcatcctgcgggactaaaactattattaggatagtggagtgatatatatgatgtttatatagtaaatgtatgggacataa |
7094944 |
T |
|
| Q |
606 |
tttctttgtggctaattcaacaacaccattactcttccagcaaacaacttcccttatatcgcgttttgcagaaatcgtgcctaaaacgatatatatactc |
705 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
7094943 |
tttctttgtggctgcttcaacaacaccattgctcttccagcaaacaacttcccttatatcgcgttttgcagaagtcgtgcctaaaacgatatata--ctc |
7094846 |
T |
|
| Q |
706 |
atctaagtcaaatgttaaaaatatattgtatcaagaattcatggccagagttacactgccatcaacaatggatgatgatattgctagggaagagtttctt |
805 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7094845 |
atctaagtcaaatgttaaaaatatattgtatcaagaattcatggccagagttacactgccatcaacaatggatgatgatattgctagggaagagtttctt |
7094746 |
T |
|
| Q |
806 |
tgaaatttgaattcaattttgtgttagttgatggctgtcagagaatatggttcgtaggagcttga |
870 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7094745 |
tgaaatttgaattcaattttgtgttagttgatggctgtcagagaatatggtccgtaggagcttga |
7094681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 7105433 - 7105187
Alignment:
| Q |
1 |
atcatctgtattgaagatttgattcacgagatactgacagttggtcctcacttcagagaggcaaacaacttcctgtggcctttcaagctcaaagctcccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7105433 |
atcatctgtattgaagatttgattcacgagatactgacagttggtcctcacttcagagaggcaaacaacttcctgtggcctttcaagctcaaagctcccc |
7105334 |
T |
|
| Q |
101 |
taggtggtatgaagaagaaaagaaatcattatgttgaaggtggtgatgctggaaacagggaagactacatcaacgaactcatcagaaggatgaattagtt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7105333 |
taggtggtatgaagaagaaaagaaatcattatgttgaaggtggtgatgctggaaacagggaagactacatcaacgaactcatcagaaggatgaattagtt |
7105234 |
T |
|
| Q |
201 |
tttggcatatcatgttgtgtaagattaattatcaagtttgagatatt |
247 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
7105233 |
tttggcatatcatgttgtgtaagattaattatcaaggttgagatatt |
7105187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 16651148 - 16650941
Alignment:
| Q |
1 |
atcatctgtattgaagatttgattcacgagatactgacagttggtcctcacttcagagaggcaaacaacttcctgtggcctttcaagctcaaagctcccc |
100 |
Q |
| |
|
||||| || ||||||||| | ||||| ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16651148 |
atcatttgcattgaagatctcattcatgagatccttactgttggacctcacttcagagaggcaaacaacttcctatggcctttcaagctcaaagctcctt |
16651049 |
T |
|
| Q |
101 |
taggtggtatgaagaagaaaagaaatcattatgttgaaggtggtgatgctggaaacagggaagactacatcaacgaactcatcagaaggatgaattagtt |
200 |
Q |
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| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||| | |
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| T |
16651048 |
tgggtggcatgaagaagaagagaaatcactatgttgaaggtggtgatgctggtaacagggaggactacatcaatgaactcattagaaggatgaattaggt |
16650949 |
T |
|
| Q |
201 |
tttggcat |
208 |
Q |
| |
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|||||||| |
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| T |
16650948 |
tttggcat |
16650941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 1426222 - 1426035
Alignment:
| Q |
10 |
attgaagatttgattcacgagatactgacagttggtcctcacttcagagaggcaaacaacttcctgtggcctttcaagctcaaagctcccctaggtggta |
109 |
Q |
| |
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||||||||| | || |||||||| |||| ||||| || || |||| || |||||||||||||| ||||| ||||||||||||||||| | ||||| |
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| T |
1426222 |
attgaagatcttatccacgagatcttgactgttggaccacatttcaaggaagcaaacaacttcctttggccattcaagctcaaagctccattgggtggct |
1426123 |
T |
|
| Q |
110 |
tgaagaagaaaagaaatcattatgttgaaggtggtgatgctggaaacagggaagactacatcaacgaactcatcagaaggatgaatta |
197 |
Q |
| |
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| ||||| || || || || ||||||||||||||||||||||||||| | ||| | |||||||| || ||||||| ||| |||||||| |
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| T |
1426122 |
taaagaaaaagaggaaccactatgttgaaggtggtgatgctggaaaccgtgaaaattacatcaatgagctcatcaaaagaatgaatta |
1426035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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