View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5213_high_10 (Length: 450)
Name: NF5213_high_10
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 33938573 - 33938150
Alignment:
| Q |
19 |
gttcttagatattttgatgaagatggtgacggaaaggtttcaccagcagagctaagacaaaggctaagaataatgggagaagagattttattgaaagaag |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33938573 |
gttcttagatattttgacgaagatggtgatggaaaggtttcaccagcagagctaagacaaaggctaagaataatgggagaagagattttattgaaagaag |
33938474 |
T |
|
| Q |
119 |
ctgaaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagaggaacaaaagtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
33938473 |
ctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaagaaggtggagaggaacaaaagtt |
33938374 |
T |
|
| Q |
219 |
gaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaagatgggggaaact |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
|
|
| T |
33938373 |
gaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaagaggatgcttaagaagatgggtgagtct |
33938274 |
T |
|
| Q |
319 |
aagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcataacaatgatgcagtgatgat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33938273 |
aagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcataacaatgatgcagtgatgat |
33938174 |
T |
|
| Q |
419 |
gttatatatgtttcgattcatttc |
442 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
33938173 |
gttatatatgttttgattcatttc |
33938150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 33931768 - 33931372
Alignment:
| Q |
19 |
gttcttagatattttgatgaagatggtgacggaaaggtttcaccagcagagctaagacaaaggctaagaataatgggagaagagattttattgaaagaag |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33931768 |
gttcttagatattttgacgaagatggtgatggaaaggtttcaccagcagagctaagacaaaggctaagaataatgggagaagagattttattgaaagaag |
33931669 |
T |
|
| Q |
119 |
ctgaaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagaggaacaaaagtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
33931668 |
ctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaagaaggtggagaggaacaaaagtt |
33931569 |
T |
|
| Q |
219 |
gaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaagatgggggaaact |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
|
|
| T |
33931568 |
gaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaagaggatgcttaagaagatgggtgagtct |
33931469 |
T |
|
| Q |
319 |
aagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcataacaatgatgcagtgat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33931468 |
aagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcataacaatgatgcagtgat |
33931372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 108 - 414
Target Start/End: Complemental strand, 42840097 - 42839791
Alignment:
| Q |
108 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagag |
207 |
Q |
| |
|
||||||||||| || || |||||||| ||| ||||||| |||||||||| | |||||||||||||| || || || | ||||| |||||||||| |
|
|
| T |
42840097 |
attgaaagaagtggagattgctattgaggcattggattctgatggtgatgggttattgagtttggaggatttgatagcgctaatggaatcagggggagag |
42839998 |
T |
|
| Q |
208 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaaga |
307 |
Q |
| |
|
||| |||| |||||||||||||| ||||| ||||| ||||||||| ||| |||||| | |||||||| |||||||||||||||||| | || ||| |
|
|
| T |
42839997 |
gaagaaaaattgaaggatttgagggaagcttttgaaatgtatgatgatgaagggtgtgggtacataacaccaaagagtttgaagaggatgttgaaaaagt |
42839898 |
T |
|
| Q |
308 |
tgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcataacaatgat |
407 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||| |||||| ||||||| ||||| || |||| || ||||| |
|
|
| T |
42839897 |
tgggggattctaagtccattgaagaatgtaaagtgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagagttcagaatcatgat |
42839798 |
T |
|
| Q |
408 |
gcagtga |
414 |
Q |
| |
|
| ||||| |
|
|
| T |
42839797 |
ggagtga |
42839791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 108 - 397
Target Start/End: Complemental strand, 42846905 - 42846616
Alignment:
| Q |
108 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagag |
207 |
Q |
| |
|
||||||||||| |||||| |||||||| ||| ||||||| |||||||||| | |||||||||| || || ||| | || ||||| |||||||||| |
|
|
| T |
42846905 |
attgaaagaagttgaaattgctattgaggcattggattctgatggtgatgggttattgagtttgggagatttgattacgttaatggaatcagggggagag |
42846806 |
T |
|
| Q |
208 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaaga |
307 |
Q |
| |
|
|| |||| |||||||||||||| ||||| ||||| |||||||||| ||| ||||| || ||||| || || ||||||||||||||| | || || |
|
|
| T |
42846805 |
gaggaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacgccaaaaagtttgaagaggatgttgaaaaaac |
42846706 |
T |
|
| Q |
308 |
tgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
397 |
Q |
| |
|
||||||| ||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
42846705 |
tgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42846616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 108 - 397
Target Start/End: Complemental strand, 42849892 - 42849603
Alignment:
| Q |
108 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatg-attatttgagtttggaggaattaattgctttgatggaggaagggggaga |
206 |
Q |
| |
|
||||||||||| ||||| || ||||| ||| ||||||| |||||||||| |||||| |||||||||||| || || | ||||| ||||||||| |
|
|
| T |
42849892 |
attgaaagaagtggaaattgcaattgaggcattggattctgatggtgatggattatt-gagtttggaggatttgataaagcttatggaatcagggggaga |
42849794 |
T |
|
| Q |
207 |
ggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaag |
306 |
Q |
| |
|
|||| |||| |||||||||||||| ||||| ||||| |||||||||| ||| ||||| || |||||||| || ||||||||||||||| | || || |
|
|
| T |
42849793 |
ggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaaaagtttgaagaggatgttgaaaaaa |
42849694 |
T |
|
| Q |
307 |
atgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
397 |
Q |
| |
|
||||||| ||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
42849693 |
ctgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42849603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University