View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_12 (Length: 431)
Name: NF5213_high_12
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Original strand, 45404067 - 45404476
Alignment:
| Q |
11 |
cacagagtatagcaggtccattggtagaagaaagtaaaacttgcgtgtttcaagttcttcatcggctaatagtccttgaattcgatggcctactctgagg |
110 |
Q |
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| T |
45404067 |
cacagagtatagcaggtccattggtagaagaaagtaaaacttgcgtgtttcaagttcttcatcggctaatagtccttgaattcgatggcctactttgagg |
45404166 |
T |
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| Q |
111 |
tagcttgagtcacaaacaaactgtccagggtattctaccatcagctctgcagctcttaatgcttttgagtgtgtctctattctcccatctaagagtaaca |
210 |
Q |
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| T |
45404167 |
tagcttgagtcacaaacaaactgtccagggtattctaccatcagctctgcagctcttaatgcttttgagtgtgtctctattctcccatctaagagtaaca |
45404266 |
T |
|
| Q |
211 |
ccttaaacacccctttggttggagtacaagaagcaacattgcccatatttctaagaagcagcttaattagaaatgttggatggttggagttgagttggag |
310 |
Q |
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| T |
45404267 |
ccttaaacacccctttggttggagtacaagaagcaacattgcccatatttctaagaagcagcttaattagaaatgttggatggttggagttgagttggag |
45404366 |
T |
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| Q |
311 |
gttgacagagcttcttatttattagacaag----ctgcctatcagtttaagaaaacaaagaaaaatagttgattgtctttttgtggccaaaggttcatag |
406 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45404367 |
gttgacagagcttcttatttattagacaagctgcctgcctatcagtttaagaaaacaaagaaaaatagttgattgtctttttgtggccaaaggttcatag |
45404466 |
T |
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| Q |
407 |
ttggtaatca |
416 |
Q |
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| T |
45404467 |
ttggtaatca |
45404476 |
T |
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