View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_14 (Length: 403)
Name: NF5213_high_14
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_14 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 28275483 - 28275827
Alignment:
| Q |
1 |
aattaataatgacaatttcataatgaaattgagctcatatctatataaaa-attcatgtgaacctcccgcgtgcttgcatgcgcgtttaaaatcatgttt |
99 |
Q |
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| T |
28275483 |
aattaataatgacaatttcataatggaattgagctcatatctatataaaaaattcatgtgaacctcccgcgtgcttgcatgcgcgtttaaaatcatgttt |
28275582 |
T |
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| Q |
100 |
ttgtgtgtttgtgatttttcatatagacatatgcatgattaaccttaaggtaataatagtataaaaggaatacaaagtttcaaactgtctaatttaatca |
199 |
Q |
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| T |
28275583 |
ttgtgtgtttgtgatttttcatatagacatatgcatgattaaccttaaggtaataatagtataaaaggaatacaaagtttcaaactgtctaatttaatca |
28275682 |
T |
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| Q |
200 |
tgataatacacacaagggacagtattcaaggaatatactctaggatttattaaattattcttcagtcttctcaaatttttaggttttggtctgcacatat |
299 |
Q |
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| T |
28275683 |
tgataatacacacaagggacagtattcaaggaatatactctaggatttattaaattattcttcagtcttctctattttttaggttttggtctgcacatat |
28275782 |
T |
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| Q |
300 |
ttttaacattagtgaagctaaattaacttggtcaaactgatagta |
344 |
Q |
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| T |
28275783 |
ttttaacattagtgaagctaaattaacttggtcaaactgatagta |
28275827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 67778 - 67715
Alignment:
| Q |
44 |
tataaaaattcatgtgaacctcccgcgtgcttgcatgcgcgtttaaaatcatgtttttgtgtgtt |
108 |
Q |
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| T |
67778 |
tataaaaattgaagtgaacctcctgcatgcttgcacgcgcgttt-aaagcatgttttcgtgtgtt |
67715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 40898506 - 40898569
Alignment:
| Q |
44 |
tataaaaattcatgtgaacctcccgcgtgcttgcatgcgcgtttaaaatcatgtttttgtgtgtt |
108 |
Q |
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| T |
40898506 |
tataaaaattgaagtgaacctcctgcatgcttgcacgcgcgttt-aaagcatgttttcgtgtgtt |
40898569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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