View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5213_high_18 (Length: 371)
Name: NF5213_high_18
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 38712128 - 38712472
Alignment:
| Q |
17 |
accttccaataattcgtatgtcttaattatttcattttacttctttatgactattctgcctgaaaaacttctttattcttacagtgcttggattcgatta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38712128 |
accttccaataattcgtatgtcttaattatttaattttacttctttatgactattctgcttgaaaaacttctttattcttacagtgcttggattcgatta |
38712227 |
T |
|
| Q |
117 |
aatttctcgcgaaagcatcattttgttaaattagaagtgatgatttagtagtactagtatatagtaactgcatggttataaacctataaatccaatttca |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38712228 |
aatttctcacgaaagcatcattttgttaaattagaagtgatgatttagtagtactagtatatagtaactgcatggttataaacctataaatccaatttca |
38712327 |
T |
|
| Q |
217 |
aatggagaggagttactatatcacttgaaaaatatgcacgtgctttgcagcttattattaatttttctgattctacttaattttgaaacgnnnnnnngtt |
316 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38712328 |
aatggagaggagttactgtatcacttgaaaaatatgcacgtgctttgcagcttattattaatttttctgattctacttaattttgaaacgtttttttgtt |
38712427 |
T |
|
| Q |
317 |
gttgcaggaataccaggagatggtagatgtatgtttagatctgtg |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38712428 |
gttgcaggaataccaggagatggtagatgtatgtttagatctgtg |
38712472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University