View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5213_high_2 (Length: 669)

Name: NF5213_high_2
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5213_high_2
NF5213_high_2
[»] chr1 (1 HSPs)
chr1 (4-648)||(22512035-22512680)


Alignment Details
Target: chr1 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 4 - 648
Target Start/End: Original strand, 22512035 - 22512680
Alignment:
Q  4 ggagtagcaaagggaagtctgtagtgaaggaaaaggacatgggtgacgtcagtgatgataaaaccaagatgaagaaatcattcaccggaaacaacttgga 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  22512035 ggagtagctaagggaagtctgtagtgaaggaaaaggacatgggtgacgtcagtgatgataaaaccgagatgaagaaatcgttcaccggaaacaacttgga 22512134  T
Q  104 agaattccgcagatttgtaaagaaagtggaattgtctatgttcaccggcgatgacccagctgggtggatcactcgcgccaagatctattttcgcgtgcaa 203  Q
    ||||||| |||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512135 agaattcagcagatctgtgaagaaagtggaattgcctatgttcgccggcgatgacccagctgggtggatcactcgcgccaagatctattttcgcgtgcaa 22512234  T
Q  204 aataccaattaagaattgaaggtgaatttagcacaattatgtatagagggttcgaccatacacttcttcaaggcgttaaccaatgatgaaggaaacctaa 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512235 aataccaattaagaattgaaggtgaatttagcacaattatgtatagagggttcgaccatacacttcttcaaggcgttaaccaatgatgaaggaaacctaa 22512334  T
Q  304 cgtgggagtgtttcaaagacgtggactgtgtttccggtgaggtggcaactctca-cccccgtcaccagtgcccggaccggcagttactcattatggtgac 402  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  22512335 cgtgggagcgtttcaaagacgtggactgtgtttccggtgcggtggcaactctcaccccccgtcaccagtgcccggaccggcagttacgcattatggtgac 22512434  T
Q  403 agaggaagacgacgaagaggaggttgaggctcaagctttagtagctgcaatggaggaagaaaatgaggacgaaggtgatttcagtgtgatgagtttgagc 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22512435 agaggaagacgacgaagaggaggttgaggctcaagctttagtagctgcaacggaggaagaaaatgaggacgaaggtgatttgagtgtgatgagtttgagc 22512534  T
Q  503 ggtcttatgacagagaagaggcaaaggttacgcacgatgaaattaaaggggtgtgtaggagggcttcccatacttatgcttgttgatagtagggcaactc 602  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512535 ggtcttatgacagagaagtggcaaaggttacacacgatgaaattaaaggggtgtgtaggagggcttcccatacttatgcttgttgatagtagggcaactc 22512634  T
Q  603 aatttcatcttcaagaaattggtagaggccatgggttgggagacag 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22512635 aatttcatcttcaagaaattggtagaggccatgggttgggagacag 22512680  T

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