View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_20 (Length: 353)
Name: NF5213_high_20
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 7094362 - 7094704
Alignment:
| Q |
1 |
cccacaatttcatcacttcgttgcttgctcaaaatacatacatcatttttaacaatatcaatgtgcttgctgtagttcttatcgccattgtcattctgag |
100 |
Q |
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| T |
7094362 |
cccacaatttcatcacttcattgcttgctcaaaatacatacatcatttttaacaatatcaatgtgtttgctgtagttcttatcgccattgtcattctgag |
7094461 |
T |
|
| Q |
101 |
cgtgtttggtttagcagcaacaagtgaaatatcgtgtctctatgtacatttgttgttgtttttgagaagctgctgattgtagagtttgtccaaacgcgcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7094462 |
cgtgtttggtttagcagcaacaagtgaaatatcgtgtctctatgtacatttgtcgttgtttttgagaagctgctgattgtagagtttgtccaaacgcgcg |
7094561 |
T |
|
| Q |
201 |
tctactgcaattgtaccgccaaaacaaacattggctctaagctgcatgtgtttgcctttggttgtagtatcaaaacatgttctccatggagatcgacgta |
300 |
Q |
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| T |
7094562 |
tctactgcaattgtaccgccaaaacaaacattggctctaagctgcatgtgtttgcctttggttgtagtatcaaaacatgttctccatggagatcgacgta |
7094661 |
T |
|
| Q |
301 |
gaataccatgctagatatttcaagctcctacgaaccatattct |
343 |
Q |
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| T |
7094662 |
gaataccatgctagatatttcaagctcctacggaccatattct |
7094704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 30859740 - 30859615
Alignment:
| Q |
111 |
ttagcagcaacaagtgaaatatcgtgtctctatgtacatttgttgttgtttttgagaagctgctgattgtagagtttgtccaaacgcgcgtctactgcaa |
210 |
Q |
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| T |
30859740 |
ttagcggcaacaaggaaaatattgtgtccctatgtacatttgttgtggtttttgagaagttgctaattgtagattttgtccaaacgtatgtccacagtaa |
30859641 |
T |
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| Q |
211 |
ttgtaccgccaaaacaaacattggct |
236 |
Q |
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| T |
30859640 |
ttgtatcgctaaaacaaacataggct |
30859615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 228
Target Start/End: Complemental strand, 15281797 - 15281668
Alignment:
| Q |
99 |
agcgtgtttggtttagcagcaacaagtgaaatatcgtgtctctatgtacatttgttgttgtttttgagaagctgctgattgtagagtttgtccaaacgcg |
198 |
Q |
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||||||||| ||||||| ||||||| |||| || | |||||||||||||||||| || ||| |||||||||||| ||| ||||||||||||||||| | |
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| T |
15281797 |
agcgtgtttagtttagcgacaacaagggaaacatggcgtctctatgtacatttgtcgtggttgttgagaagctgccaattttagagtttgtccaaacgtg |
15281698 |
T |
|
| Q |
199 |
cgtctactgcaattgtaccgccaaaacaaa |
228 |
Q |
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|||||| ||||||||| || |||||||| |
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| T |
15281697 |
cgtctatgacaattgtactgctaaaacaaa |
15281668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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