View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_21 (Length: 351)
Name: NF5213_high_21
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 29222986 - 29223273
Alignment:
| Q |
1 |
aatcagtggtggagttagaaataattttcagggtgggccaatttgtgctttgttcatatatactattaatagcaagattgnnnnnnnn---ggttgttac |
97 |
Q |
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| T |
29222986 |
aatcagtggcggagatagaaataattttcggggtgggtcaatttgtgctttgttcatacata-tattaatagcaagattgaaaaaaaaaaaggttgttac |
29223084 |
T |
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| Q |
98 |
ctttaatggtaaagaattattaaagtgtagcagtatgcacggttcgaaccttcatggtcnnnnnnnnnnnnnnnnnaaaaataatctaaagaaattaaaa |
197 |
Q |
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| T |
29223085 |
ctttaatggtaaagaattattaaagtgttgcagtatgcgcggtacgaaccttcatggtctttttaatttatttttaaaaaa-aatcgaaagaaattaaaa |
29223183 |
T |
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| Q |
198 |
agagtgtcccaacagaagttgatcttaagacgtgcaaaacctttgccaaaccactggaacacgctgcatcattattacttctaacgcaac |
287 |
Q |
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| T |
29223184 |
agagtgtcccaacagaagttgatcttaagacgtgcaaaacctttgccaaaccgctgaaacacactgcatgattattacttctaacgcaac |
29223273 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 25368446 - 25368407
Alignment:
| Q |
5 |
agtggtggagttagaaataattttcagggtgggccaattt |
44 |
Q |
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| T |
25368446 |
agtggtggagttagaaataattttcagggtgggctaattt |
25368407 |
T |
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