View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_3 (Length: 633)
Name: NF5213_high_3
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 49717301 - 49717913
Alignment:
| Q |
1 |
atgcgcgtatgtctgcaaacaagttggttagttttcttcattgaatgcttaggaaatgaacaatgttaataatctgcaattcacattttgaataagtaaa |
100 |
Q |
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| T |
49717301 |
atgcgcatatgtctgcaaacaagttggttagttttcttcattgaatgcttaggaaaagaacaatgttaataatctgcaattcacatt--gaataagtaaa |
49717398 |
T |
|
| Q |
101 |
atcttacttgatcaccgacatcccacaaaatcttgtcaactggagcatgaaaaacatgatgtattgcaactgtgaggtccaccacagccatactaggatt |
200 |
Q |
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| T |
49717399 |
atcttacttgatcaccgacatcccacaaaatcttgtcaactggagcatgaaaaacatgatgtattgcaactgtgaggtccaccacagccatactaggatt |
49717498 |
T |
|
| Q |
201 |
cagtaatatttgcgtgctcgacaaaatagaagacaactctaaacggatttcagcagctagttgtttcaattcttgctgagaaaggttcttcaagcaaaga |
300 |
Q |
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| T |
49717499 |
cagtaatatttgcgtgcccgacaaaatagaagacaactctaaacggatttcagcagctagttgtttcaactcttgctgagaaaggttcttcaagcaaaga |
49717598 |
T |
|
| Q |
301 |
gggttttgaactgtgtcaagaatgggtgttggaactttctcccagtagaaatcatcaatatcaggtcgtgaacatactcgatgaattaagattct---ag |
397 |
Q |
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| T |
49717599 |
gggttttgaactgtgtcaagaatgggtgttggaactttctcccagtagaaatcatcaatatcaggtcgtgaacatactcgatgaattaagattctagaag |
49717698 |
T |
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| Q |
398 |
aagaagaataggtgattctggaaagggggaattgggatattgagcaatccaatctgcgagttagggtttgggaatggaaagggattacaaatgggtatct |
497 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49717699 |
aagaagaatatgtgattctggaaagggggaattgggagattgagcaatccaatctgcgagttagggtttgggaatggaaagggattacaaatgggtatct |
49717798 |
T |
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| Q |
498 |
agcacaaacagtacccatcattactcaaatcttcaaacttcacaattcacaaaaaatatcctagtattattttgtttcaaatgaatcaatagaccgtatg |
597 |
Q |
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| T |
49717799 |
agcacaaacagtacccatcattactcaaatcttcaaacttcacaattcacaaaaaatatcctagtattattttgtttcaaatgaatcaattgaccgtatg |
49717898 |
T |
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| Q |
598 |
agactgcaatttggc |
612 |
Q |
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| T |
49717899 |
agactacaatttggc |
49717913 |
T |
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