View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_30 (Length: 292)
Name: NF5213_high_30
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 38418482 - 38418260
Alignment:
| Q |
22 |
aaataaaatgattattttggtcctttacaaaaatcaattgatgcattatatggttccgtactttccaattttttgtgtatttgttttaaattttaggaca |
121 |
Q |
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| T |
38418482 |
aaataaaatgattattttggtcctttacaaaaatcaatcgatgcattatatggttccgtactttccaattttttgtgtatttgttttaaattttaggaca |
38418383 |
T |
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| Q |
122 |
aaattgtctcnnnnnnnttgttgtagagatctaaatatcaccttatttttgtttaaaatacacgtgaaccattcattatatgacatgcagactgccatat |
221 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
38418382 |
aaattgtctcaaaaaaattgttgtagagatctaaatatcaccttatttttgtttaaaatacacgtgaaccattcattatatgacatgcagactaccgtat |
38418283 |
T |
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| Q |
222 |
aatccagtcatgattcaaagatg |
244 |
Q |
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||||||||||||||||||||||| |
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| T |
38418282 |
aatccagtcatgattcaaagatg |
38418260 |
T |
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