View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_31 (Length: 292)
Name: NF5213_high_31
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 18252132 - 18251866
Alignment:
| Q |
19 |
tttttcacaacaaatactaaattaagacatgttattggaaaagtatctaaataaagattctactttgtatactatatagtttgtagctagtgtttaccct |
118 |
Q |
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| T |
18252132 |
tttttcacaacaaatactaaattgagacatgttattggaaaagtatctaaataaagattctactttgtatgctatatagtttgtagctagtgtttaccct |
18252033 |
T |
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| Q |
119 |
ccccttctcactaggaaatgacaccggtgatttggagtttggtcggaaagcaaattcagtttctcttgaacaatttctcctcgatgctcattaaccattt |
218 |
Q |
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| T |
18252032 |
ctccttctcactagaaaatgacaccggtgatttggagtttggtcagaaagcaaactcagtttctcttgaacaatttctcctcgatacttattaaccactt |
18251933 |
T |
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| Q |
219 |
gtatctaattgcttggttattttatatatccatgtcttttctctaccactcttgttatttcttctca |
285 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18251932 |
gtatctaattgtttggttattttatatatccacgtcttttctctaccactcttgttatttcttctca |
18251866 |
T |
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