View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_32 (Length: 291)
Name: NF5213_high_32
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 3287816 - 3288080
Alignment:
| Q |
9 |
acatcatcaaaatttttgtaagtaagaatactaggatcatatagaaacacaagtgaaggggatctaaaaattatcctcnnnnnnnctttcttgatcttct |
108 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3287816 |
acatcatcaaaaattttgtaagtaagaatactaggatcatatagaaacacaagtgaaggggatctaaaaattatcctctttttttctttcttgatcttct |
3287915 |
T |
|
| Q |
109 |
tccataatttttctaagcttgcgatcttcattctgaccataaactcattgacaaatacaacagggtcgttgccaattctctcataacttgaccaaatgca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3287916 |
tccataatttttctaagcttgcgatcttcattctgaccataaactcattgacaaatacaacagggtcgttgccaattctctcataacttgaccaaatgca |
3288015 |
T |
|
| Q |
209 |
gttgtttcttgagcctagacaagacagtcacaattttcaaagtccatggtatatggagtagagga |
273 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3288016 |
gttgtttcttgagcctagacaagacagtcacaattttcaaagtccatggtatatggagtagagga |
3288080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 3256830 - 3257085
Alignment:
| Q |
10 |
catcatcaaaatttttgtaagtaagaatactaggatcatatagaaacacaagtgaaggggatctaaaaattatcctcnnnnnnnctttcttgatcttctt |
109 |
Q |
| |
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||||||||||||||| |||||||||||| ||| |||||||| ||| || |||| || |||||||| ||| ||||| ||||||| |||||||| |
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| T |
3256830 |
catcatcaaaatttt-gtaagtaagaat--tagaatcatatataaatactggtgagggcgatctaaatattctcctcttcttttctttcttaatcttctt |
3256926 |
T |
|
| Q |
110 |
ccataatttttctaagcttgcgatcttcattctgaccataaactcattgacaaatacaacagggtcgttgccaattctctcataacttgaccaaatgcag |
209 |
Q |
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||| ||||||| ||||||||| ||||||||||| |||||| ||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
3256927 |
ccacaatttttttaagcttgctatcttcattcttgccataagttcattgacacattcaataggatcgttgccaattctctcataacttgaccaaatgcag |
3257026 |
T |
|
| Q |
210 |
ttgtttcttgagcctagacaagacagtcacaattttcaaagtccatggtatatggagtagagga |
273 |
Q |
| |
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|||||||||||||||||||| || ||||| |||| ||||||||| |||||||||||||| |
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| T |
3257027 |
ttgtttcttgagcctagaca-----gttgcaattatcaaggtccatggtgtatggagtagagga |
3257085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 3279964 - 3280220
Alignment:
| Q |
10 |
catcatcaaaatttttgtaagtaagaatactaggatcatatagaaacacaagtgaaggggatctaaaaattatcctcnnnnnnnctttcttgatcttctt |
109 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| |||||||||||| || ||||||| ||| |||| ||| ||||| ||||| | |||||||| |
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| T |
3279964 |
catcatcaaaatttt-gtaagtaagaat--tagaatcatatagaaatactggtgaaggcgatttaaatattttcctcttcttttctttcataatcttctt |
3280060 |
T |
|
| Q |
110 |
ccataatttttctaagcttgcgatcttcattctgaccataaactcattgacaaatacaacagggtcgttgccaattctctcataacttgaccaaatgcag |
209 |
Q |
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||| ||||||| ||||||||| ||||||||||| |||| | ||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
3280061 |
ccacaatttttttaagcttgctatcttcattcttgccatgagttcattgacacattcaacaggatcgtttccaattctctcataacttgaccaaatgcag |
3280160 |
T |
|
| Q |
210 |
ttgtttcttgagcctagacaagacagtcacaattttcaaagtccatggtatatggagtagaggat |
274 |
Q |
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|||||||||||||||||||| || ||||| |||| ||||||||| ||| ||||||||||| |
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|
| T |
3280161 |
ttgtttcttgagcctagaca-----gttgcaattatcaaggtccatggtgtatagagtagaggat |
3280220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 94 - 273
Target Start/End: Original strand, 3295914 - 3296088
Alignment:
| Q |
94 |
ctttcttgatcttcttccataatttttctaagcttgcgatcttcattctgaccataaactcattgacaaatacaacagggtcgttgccaattctctcata |
193 |
Q |
| |
|
||||||||||||||||||| || |||| ||||||| ||||||||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||||| |
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| T |
3295914 |
ctttcttgatcttcttccacaaatttttcaagcttgatatcttcattctagccataaattcattgacacatacaataggatcattgccaattctctcata |
3296013 |
T |
|
| Q |
194 |
acttgaccaaatgcagttgtttcttgagcctagacaagacagtcacaattttcaaagtccatggtatatggagtagagga |
273 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||| |
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|
| T |
3296014 |
agttgaccaaatgcagttgtttcttgagcctagaca-----gttgcaattttcaaggtccatggtgtatggagtagagga |
3296088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 3289888 - 3290143
Alignment:
| Q |
10 |
catcatcaaaatttttgtaagtaagaatactaggatcatatagaaacacaagtgaaggggatctaaaaattatcctcnnnnnnnctttcttgatcttctt |
109 |
Q |
| |
|
||||||||||||||| |||||||||| | |||||||||||||||||| | |||| |||||||||| ||||| ||||||| |||||||| |
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| T |
3289888 |
catcatcaaaatttt-gtaagtaagagca--aggatcatatagaaacaccggcgaagatcttctaaaaattctcctcttctttgctttctttatcttctt |
3289984 |
T |
|
| Q |
110 |
ccataatttttctaagcttgcgatcttcattctgaccataaactcattgacaaatacaacagggtcgttgccaattctctcataacttgaccaaatgcag |
209 |
Q |
| |
|
||| ||||||| |||||||| ||||| ||||| |||| ||||||||| || |||||| ||| || |||||||||||||||||||||||||||||||| |
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|
| T |
3289985 |
ccacaatttttttaagcttgatatctttattcttgccatgaactcattggcacatacaataggatcattgccaattctctcataacttgaccaaatgcaa |
3290084 |
T |
|
| Q |
210 |
ttgtttcttgagcctagacaagacagtcacaattttcaaagtccatggtatatggagtagagga |
273 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||| |||||||||||| |||||||||| |
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|
| T |
3290085 |
ttgtttcttgagctt-----agacagttgcaattttcaagttccatggtatatagagtagagga |
3290143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 40 - 230
Target Start/End: Original strand, 3250650 - 3250840
Alignment:
| Q |
40 |
taggatcatatagaaacacaagtgaaggggatctaaaaattatcctcnnnnnnnctttcttgatcttcttccataatttttctaagcttgcgatcttcat |
139 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||||||||||| ||||| || ||||||||||| |||| || ||| |||||||| |||||||| |
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| T |
3250650 |
taggatcatatataaacacaggtgaagatgatctaaaaattctcctctttttctctctcttgatcttcctccacaaagttttcaagcttgctatcttcat |
3250749 |
T |
|
| Q |
140 |
tctgaccataaactcattgacaaatacaacagggtcgttgccaattctctcataacttgaccaaatgcagttgtttcttgagcctagacaa |
230 |
Q |
| |
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|||| ||| || ||||||||| |||||| |||||| | ||||| |||||||||||||||| |||||| || |||||||| || ||||||| |
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| T |
3250750 |
tctgctcatgaattcattgacacatacaatagggtcatagccaagtctctcataacttgacaaaatgctgtggtttcttgtgcttagacaa |
3250840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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