View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_33 (Length: 289)
Name: NF5213_high_33
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 22339378 - 22339656
Alignment:
| Q |
1 |
agtttcttgttgggtaagttagttcagaagggtgaagggagggtagcggttatggtttttgatcagattgtggggactgggattgtgccggatgtttata |
100 |
Q |
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| T |
22339378 |
agtttcttgttgggtaagttagttcagaagggtgaagggagggtagcggttatggtttttgatcagattgtggggactgggattgtgccggatgtttata |
22339477 |
T |
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| Q |
101 |
tgtgtagtattgttgtcaacgcgcattgtcaggttgggagggtggatgttgctatggaggttttggagaagatggtgaaggaggggttggagccgaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22339478 |
tgtgtagtattgttgtcaacgcgcattgtcaggttgggagggtggatgttgctatggaggttttggagaagatggtgaaggaggggttggagccgaatgt |
22339577 |
T |
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| Q |
201 |
tgtaacttacaatggtttggttaatgggtatgttggtcgaggtgattctgaaggagttgagagggtgttgaggttgatg |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22339578 |
tgtaacttacaatggtttggttaatgggtatgttggtcgaggtgattttgaaggagttgagagggtgttgaggttgatg |
22339656 |
T |
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