View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5213_high_39 (Length: 251)

Name: NF5213_high_39
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5213_high_39
NF5213_high_39
[»] chr4 (2 HSPs)
chr4 (13-240)||(40954952-40955180)
chr4 (31-240)||(40954702-40954908)
[»] chr6 (1 HSPs)
chr6 (13-240)||(8074068-8074292)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 40954952 - 40955180
Alignment:
Q  13 attctggaataggaaaatggtattatcgggtgtatgacataaatgttacggacatatcaatttt-cataataaagcatatcttgtcacaaacgaggttga 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  40954952 attctggaataggaaaatggtattatcgggtgtatgacataaatgttacggacatatcaatttttcataataaagcatatcttgtcacaagcgaggttga 40955051  T
Q  112 tttcggggagttgaagataaatgtagatgatgctatctgtgcttggatgcatgtgcatcatattcctaatgatgattcagaagatcttaaactgattaat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40955052 tttcggggagttgaagataaatgtagatgatgctagctgtgcttggatgcatgtgcatcatattcctaatgatgattcagaagatcttaaactgattaat 40955151  T
Q  212 tgtaacaaatgatcaatttttattggttg 240  Q
    |||||||||||||||| ||||||||||||    
T  40955152 tgtaacaaatgatcaacttttattggttg 40955180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 40954908 - 40954702
Alignment:
Q  31 ggtattatcgggtgtatgacataaatgttacggacatatcaatttt-cataataaagcatatcttgtcacaaacgaggttgatttcggggagttgaagat 129  Q
    |||||||| ||||||||||||||||||||||||||| |  |||||| |||||||||| |||||||||||||| ||||| |||||| |||||||||| |||    
T  40954908 ggtattatggggtgtatgacataaatgttacggacaaagaaatttttcataataaagtatatcttgtcacaagcgaggctgattttggggagttgaggat 40954809  T
Q  130 aaatgtagatgatgctatctgtgcttggatgcatgtgcatcatattcctaatgatgattcagaagatcttaaactgattaattgtaacaaatgatcaatt 229  Q
    ||||||||||||||||| || ||||||||| | |||||||||||||||||||||||||| | |||||||||| |||||||    |||||||||||||| |    
T  40954808 aaatgtagatgatgctagctttgcttggattcttgtgcatcatattcctaatgatgatttataagatcttaagctgatta----taacaaatgatcaact 40954713  T
Q  230 tttattggttg 240  Q
    |||||||||||    
T  40954712 tttattggttg 40954702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 8074068 - 8074292
Alignment:
Q  13 attctggaataggaaaatggtattatcgggtgtatgacataaatgttacggacatatcaatttt-cataataaagcatatcttgtcacaaacgaggttga 111  Q
    |||||||| |||| |||||||||||| ||||||||||| | |||||||| |||||| ||||||| | |||||||| |||||||||||||| ||||| |||    
T  8074068 attctggagtagggaaatggtattatggggtgtatgacgtgaatgttacagacatagcaatttttcgtaataaagtatatcttgtcacaagcgaggctga 8074167  T
Q  112 tttcggggagttgaagataaatgtagatgatgctatctgtgcttggatgcatgtgcatcatattcctaatgatgattcagaagatcttaaactgattaat 211  Q
     ||||||||||||||||||||| ||| |||||||| || ||||||||||| ||||||||| ||||| ||||||||||||||||||||||| |    | ||    
T  8074168 cttcggggagttgaagataaatatagctgatgctagctttgcttggatgcctgtgcatcaaattccgaatgatgattcagaagatcttaagc----ttat 8074263  T
Q  212 tgtaacaaatgatcaatttttattggttg 240  Q
     ||||||||||||||| |||| |||||||    
T  8074264 cgtaacaaatgatcaactttttttggttg 8074292  T

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