View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_40 (Length: 247)
Name: NF5213_high_40
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 45403195 - 45402965
Alignment:
| Q |
1 |
tgcatcaaagacaatgaaatgaatgaggggttgaaaaatggggataggtactagaagtgattttattacacatgaagagatagaaaggttgattttataa |
100 |
Q |
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| T |
45403195 |
tgcatcaaagacaatgaaatgaatgaggggttgaaaaatggggataggtactagaagtgattttattacacatgaagagatagaaaggttgattttataa |
45403096 |
T |
|
| Q |
101 |
tactacatacaacataaagaaagcatgtgagctcaaaggtggttgtttagtcacctaccataaaacctgactacccatccatctcttgtttccttctctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45403095 |
tactacatacaacataaagaaagcatgtgagctcaaaggtggttgtttagtcacctaccataaaacctgactacccatccatctcttgtttccttctctt |
45402996 |
T |
|
| Q |
201 |
tactttgcaggcacacaagtggtgtgctaat |
231 |
Q |
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||||| ||||||||||||||||||||||||| |
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| T |
45402995 |
tacttcgcaggcacacaagtggtgtgctaat |
45402965 |
T |
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