View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5213_high_43 (Length: 238)

Name: NF5213_high_43
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5213_high_43
NF5213_high_43
[»] chr4 (2 HSPs)
chr4 (17-238)||(40955237-40955458)
chr4 (17-238)||(40954425-40954644)
[»] chr6 (1 HSPs)
chr6 (17-238)||(8074350-8074571)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 40955458 - 40955237
Alignment:
Q  17 aataccaaccaagtgaggaaacttgatcaccggattttcccacaattgggatcatgtgtattagcttttcctccatcgaataaatgcaacacctcgcttg 116  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |    
T  40955458 aataccaaccaagtgaggaaacctgatcaccggatttttccacaattgggatcatgtgtattagcttttcctccatcaaataaatgcaacacctcgcagg 40955359  T
Q  117 aaaagtctcgagataatacacaaaattgctaagatgtccccatttacccagtcttctcacatcacaatgacccttccctcctaagaataattctttatca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40955358 aaaagtctcgagataatacacaaaattgctaagatgtccccatttacccagtcttctcacatcacaatgacccttacctcctaagaataattctttatca 40955259  T
Q  217 cctagatcgcccaccttaatcc 238  Q
    ||||||||||||||||||||||    
T  40955258 cctagatcgcccaccttaatcc 40955237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 40954425 - 40954644
Alignment:
Q  17 aataccaaccaagtgaggaaacttgatcaccggattttcccacaattgggatcatgtgtattagcttttcctccatcgaataaatgcaacacctcgcttg 116  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |    
T  40954425 aataccaaccaagtgaggaaacatgatcaccgaattttcccacaattgggatcatgtgtattagctttgcctccatcgaataaatgcaacacctcgcagg 40954524  T
Q  117 aaaagtctcgagataatacacaaaattgctaagatgtccccatttacccagtcttctcacatcacaatgacccttccctcctaagaataattctttatca 216  Q
    |||||||| ||||||||||||  || ||||||||||| | |||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||    
T  40954525 aaaagtcttgagataatacac--aactgctaagatgtacgcatttacccagtcttctcacatcacaatgacccttaactcctaagaataatgctttatca 40954622  T
Q  217 cctagatcgcccaccttaatcc 238  Q
    |||| |||||||||||||||||    
T  40954623 cctaaatcgcccaccttaatcc 40954644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 8074571 - 8074350
Alignment:
Q  17 aataccaaccaagtgaggaaacttgatcaccggattttcccacaattgggatcatgtgtattagcttttcctccatcgaataaatgcaacacctcgcttg 116  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |  || ||||||||||||||||||   ||||| || |||||||| ||||| ||  |    
T  8074571 aataccaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcagg 8074472  T
Q  117 aaaagtctcgagataatacacaaaattgctaagatgtccccatttacccagtcttctcacatcacaatgacccttccctcctaagaataattctttatca 216  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||| ||| ||||||||    
T  8074471 aaaagtctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaatgacccttacctcctaagaacaatgctttatca 8074372  T
Q  217 cctagatcgcccaccttaatcc 238  Q
    || | ||| | |||||||||||    
T  8074371 cccaaatcactcaccttaatcc 8074350  T

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