View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_6 (Length: 516)
Name: NF5213_high_6
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 302 - 497
Target Start/End: Original strand, 16899295 - 16899490
Alignment:
| Q |
302 |
cctacacgtctctctcctttaaatatctataaaggtccgtttgatgcaagtaagcagaagaacaagacagacatttgagttactgacaattttttgtcat |
401 |
Q |
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| T |
16899295 |
cctacacgtctctctcctttaaatatctataaaggtccgtttgatgcaagtaagcagaagaacaagacaaacatttgagttacagacaattttttgtcat |
16899394 |
T |
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| Q |
402 |
gatatttggtagacagtataaaacacaaacaaaacagtgaaatttactacgattttacttcttccctcatgaaattatgagctaaattaaccaatt |
497 |
Q |
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| T |
16899395 |
gatatttggtagacagtataaaacacaaacaaaacagtgaaatttactacgattttacttcttccctcatgaaattatgagctaaattaaccaatt |
16899490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 16899024 - 16899231
Alignment:
| Q |
12 |
caacattttataggaagggtgtcttgtttcgtacaatattaaattattttgttttttccgtcggatatgatttgcgcgcagttaaaaagactaatcttcg |
111 |
Q |
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| T |
16899024 |
caacattcaataggaagggaatcttgttacgtaccatattcaattattttgtttttta-gactgatataatctgcgcgcaattacaaagactaatcttcg |
16899122 |
T |
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| Q |
112 |
agttgagtaagaagataatgaaggacaaaactctcatttgaaatttaacacccctgtatctttagggttggtttaaaacctagaacatatgattaaaccg |
211 |
Q |
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| T |
16899123 |
agttgagtaagaagataatgaaggacaaaactctcatttgaaatttaacacccctgtatttttagggttggtttaaaatctagaacatatgattaaactg |
16899222 |
T |
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| Q |
212 |
aaagagatc |
220 |
Q |
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| T |
16899223 |
aaagagatc |
16899231 |
T |
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