View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_high_7 (Length: 476)
Name: NF5213_high_7
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 12 - 460
Target Start/End: Complemental strand, 28817841 - 28817393
Alignment:
| Q |
12 |
aacctgtgttgcgttgtgtggcacccttgcagggcaactcttctttggctggcttggtgacaaacttggtagnnnnnnngtttatggcataactcttact |
111 |
Q |
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| T |
28817841 |
aaccggtgttgcgttgtgtggcacccttgcagggcaactcttctttggctggcttggtgacaaacttggtagaaaaaaagtttatggcataactcttact |
28817742 |
T |
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| Q |
112 |
accatggttggttttgctttattatcaggtctttcctttggttccacgccgaaaaccgtggtaactagtctttgtttcttcagattctggctaggattcg |
211 |
Q |
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| T |
28817741 |
accatggttggttttgctttattatcaggtctttcctttggttccacgccgaaaaccgtggtaactagtctttgtttcttcagattctggctaggattcg |
28817642 |
T |
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| Q |
212 |
gcatcggtggagactatcctctatcagctgtgatcatgtctgaatatgctaatcagaaaacacgaggaagttttattgctgctgttttcgctatgcaagg |
311 |
Q |
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| T |
28817641 |
gcattggtggagactatcctctatcagctgtgatcatgtctgaatatgctaatcagaaaacacgaggaagttttattgctgctgttttcgctatgcaagg |
28817542 |
T |
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| Q |
312 |
agttggaatattggttgctggaggcgtagccatgtttgtctcgaaactattcttattgtactttccagctcctgattttgaaactgatgctgttctatct |
411 |
Q |
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| T |
28817541 |
agttggaatattggttgctggaggcgtagccatgtttgtctcgaaactattcttattgtactttccagctcctgattttgaaactgatgctgttctatcc |
28817442 |
T |
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| Q |
412 |
actcaaccagaaggtgatttcgtttggagaattgtgttaatgtttggtg |
460 |
Q |
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| T |
28817441 |
actcaaccagaaggtgatttcgtttggagaattgtgttaatgtttggtg |
28817393 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 37315912 - 37315832
Alignment:
| Q |
180 |
tctttgtttcttcagattctggctaggattcggcatcggtggagactatcctctatcagctgtgatcatgtctgaatatgc |
260 |
Q |
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|||||||||||| |||||||||||||| || || || ||||| || || ||||| |||||| || |||||||||||||| |
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| T |
37315912 |
tctttgtttctttagattctggctaggttttggtattggtggtgattaccctctttcagctactattatgtctgaatatgc |
37315832 |
T |
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