View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_10 (Length: 461)
Name: NF5213_low_10
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 248 - 444
Target Start/End: Original strand, 18151121 - 18151317
Alignment:
| Q |
248 |
atgaatttttattgacattcaaactagaaagaatttgtttccttttcatggagaattttgagtcttgaatcttgatacctctagcattagaagtgtgtcc |
347 |
Q |
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| T |
18151121 |
atgaatttttattgacattcaaactagaaagaatttgtttccttttcatggagaattttgagtcttgaatcttgatacctctagcattagaagtgtgtcc |
18151220 |
T |
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| Q |
348 |
ataggatttgtacctggtgactctgaaaagttgcgtcatcccatacattttgatctttttatattatgaactttatagcgcttatcaacaaatgatc |
444 |
Q |
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| T |
18151221 |
ataggatttgtacctggtgactctgaaaagttgcgtcatcccataccttttgatctttttatattatgaactttatagcgcttatcaacaaatgatc |
18151317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 18150884 - 18151046
Alignment:
| Q |
10 |
attattctgtttatggtagtgactacggttgaaaattgttgctgcggtggtgctgtgaatgtttatattagagtagaggattgtgaattttaaagcacac |
109 |
Q |
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| T |
18150884 |
attatgctgtttatggtagtgactacggttgaaaattgttgctgcggtggtgctgtgaatgtttatattagggtagaggattgtgaattttaaagcacac |
18150983 |
T |
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| Q |
110 |
tctaggcttctaaattctacatgatgtcttgttttgcatactgattttttaaatcgcacactg |
172 |
Q |
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| T |
18150984 |
tctaggcttctaaattctacatgatgtcttgttttgcatactgattttttaaatcgcacactg |
18151046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 18158218 - 18158293
Alignment:
| Q |
83 |
tagaggattgtgaattttaaagcacactctaggcttctaaattctacatgatgtcttgttttgcatactgattttt |
158 |
Q |
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| T |
18158218 |
tagaggattgtgaattttaaagctcactttaggcttctaaatcctaaatgatgtctagttttgcatactgattttt |
18158293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 444
Target Start/End: Original strand, 18158967 - 18159048
Alignment:
| Q |
361 |
ctggtgactctgaaaa-gttgcgtcatcccatacattttgatctttttatattatgaactttatagcgcttatcaacaaatgatc |
444 |
Q |
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| T |
18158967 |
ctggtgactctgaaaaagttgcgccatcccatagcttt-gatctttttatattatgaactttatagtgc--atcaacaaatgatc |
18159048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 18158288 - 18158345
Alignment:
| Q |
252 |
atttttattgacattcaaactagaaagaatttgtttccttttcatggagaattttgagtctt |
313 |
Q |
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| T |
18158288 |
atttttattgacattcaaactagaa----tttgtttccctttcatggagaattttgagtctt |
18158345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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