View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_12 (Length: 446)
Name: NF5213_low_12
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 52510773 - 52511196
Alignment:
| Q |
17 |
atttggtttactcaataaaaaa-tatgtacaagacttggtagcctctcagccccatttaactgcctctctcaaataagnnnnnnnnnntcttttgctatt |
115 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52510773 |
atttggtttactcaataaaaaaatatgtacaagacttggtagcctctcagccccatttaactgcctctctcaaataagaaaaaaaaa-tcttttgctatt |
52510871 |
T |
|
| Q |
116 |
caccaatttttaaatttcttttgaggttcattagtgtgtctggactgtaaattcacgtgttgttctcctctctttgtatcatcaattttaatctcattta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52510872 |
caccaatttttaaatttcttttgaggttcattagtgtgtctggactgtaaattcacgtgttgttctcctctctttgtatcatcaattttaatctcattta |
52510971 |
T |
|
| Q |
216 |
attaattacctaacctaagtgagcagaagttaaactcttaccttttcacacggaaatttctaaaactctgccaatgagaagacatatatgtttttggctc |
315 |
Q |
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|| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
52510972 |
atgaattacctaacctaagtgaacagaagttaaacttttaccttttcacacggaaatttct-aaactctgccaatgacaagacatatatgtttttggctc |
52511070 |
T |
|
| Q |
316 |
ttgtcctttacaacaaaaacaatcctccataaacagtaatagtattctcattgtttgtgtctgtctgtcactaactcactatatgtggaccatcttcagt |
415 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52511071 |
ttgttctttacaacaaaaacaatcctccataaacagtaatagtattctcattgtttgtgtctgtctgtcactaactcactatatgtggaccatcttcagt |
52511170 |
T |
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| Q |
416 |
ttaagctcattttgtcctttgcttct |
441 |
Q |
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||||||||||||||| |||||||||| |
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| T |
52511171 |
ttaagctcattttgttctttgcttct |
52511196 |
T |
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