View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_16 (Length: 399)
Name: NF5213_low_16
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 14422621 - 14422253
Alignment:
| Q |
14 |
ttctgagactgtttgaaagaatttatgaatataatttatgacatggccacaaactattttaagtttattttcatatcctctccaagataatttatggaaa |
113 |
Q |
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| T |
14422621 |
ttctgagactgtttgaaagaatttatgaaaatagtttatgacatggccacaaactattttaagtttattttcataacctctccaagataatttatggaaa |
14422522 |
T |
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| Q |
114 |
caatttacttgcgcttttatatgaaagaaaacattttattagttttttatatcgaatataactcatcattacaaagccttttgtaaggatgatttagacc |
213 |
Q |
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| T |
14422521 |
caatttacttgcgcttttatatgaaagaaaacattttattaattttttatatcgaatataactcatcattacaaagccttttgtaaggatgatttagatc |
14422422 |
T |
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| Q |
214 |
taatataaaactttaatatgatatcaacgtttatgaaaacaattgaataa-ctgatccacaaacatttatatgataagcatctatgctatcaacgtttga |
312 |
Q |
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| T |
14422421 |
taatataaaattttaatatgatatcaacgtttatgaaaacaattgaataatttaatccacaaacatttatatgataagcatctatgctatcaacgtttga |
14422322 |
T |
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| Q |
313 |
ttattatgtttatccaaacaggtattgaaacttttgtaagagtatgaatgaagatttaaattgaatcta |
381 |
Q |
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| T |
14422321 |
ttattatgtttatccaaacaggtattgaaacttctataagagtatgaatgaagatttaaattgaatcta |
14422253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 33116689 - 33116618
Alignment:
| Q |
17 |
tgagactgtttgaaagaatttatgaatataatttatgacatggccacaaactattttaagtttattttcata |
88 |
Q |
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| T |
33116689 |
tgagactgtttgagggaatttatgaaaacaacttatgacatgtgcataaactcttttaagtttatttccata |
33116618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 42237919 - 42237954
Alignment:
| Q |
23 |
tgtttgaaagaatttatgaatataatttatgacatg |
58 |
Q |
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| T |
42237919 |
tgtttgaaagaatttatgaaaataatttatgacatg |
42237954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 3549520 - 3549573
Alignment:
| Q |
17 |
tgagactgtttgaaagaatttatgaatataatttatgacatggccacaaactat |
70 |
Q |
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| T |
3549520 |
tgagactgtttgagagaacttatgaaaatagtgtatgacatgtccacaaactat |
3549573 |
T |
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