View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_17 (Length: 397)
Name: NF5213_low_17
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 379
Target Start/End: Original strand, 8490696 - 8491066
Alignment:
| Q |
9 |
tcgaagaatatacatcaaaacggaatcagttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtcctt |
108 |
Q |
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| T |
8490696 |
tcgaagaatgtacatcaaaacggaatcggttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtcctt |
8490795 |
T |
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| Q |
109 |
caccaaagnnnnnnnngggacgcccatatgcttaaatgtcaatacatataccttatattttatctcatgtatccnnnnnnntatcacacaannnnnnnat |
208 |
Q |
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| T |
8490796 |
caccaaagaaaaaaaagggatgcccatatgcttaaatgtcaatacatataccttatattttatctcatgtatccaaaaaaatatcacacaatttttttat |
8490895 |
T |
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| Q |
209 |
aactaaaaacaacaatcattggccgacacttatgattcctttggatacaaacaaattgtttgttaagatgcttgatgatatacaagacaaagggaaacag |
308 |
Q |
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| T |
8490896 |
aactaaaaacaacaatcattggccgacacttatgattcctttggatacaaacaaattgtttgttaagatgcttgatgatatacaagacaaagggaaacag |
8490995 |
T |
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| Q |
309 |
tattgcttaccctcttcagttgttgagtttgtgctatcacaccaaattgcttccctaatgcgaggaggtgc |
379 |
Q |
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| T |
8490996 |
tattgcttaccctcttcagttgttgagtttgtgctatcacaccaaattgcttccctaatgcgaggaggtgc |
8491066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 8490427 - 8490529
Alignment:
| Q |
12 |
aagaatatacatcaaaacggaatcagttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtccttcac |
111 |
Q |
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| T |
8490427 |
aagaatgtacatccagacggaatcagttttctaaaaagtgttgagggagaggtagctctaaaaattgaatgaacatttatggtacccttatgtccttcac |
8490526 |
T |
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| Q |
112 |
caa |
114 |
Q |
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| T |
8490527 |
caa |
8490529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 8489909 - 8489962
Alignment:
| Q |
62 |
ggtagctctcaaaattgaatgaacatttatgattcccttatgtccttcaccaaa |
115 |
Q |
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| T |
8489909 |
ggtagctctcacaattgaattaacatttatgatgccgttatgtccttcaccaaa |
8489962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 8474041 - 8474104
Alignment:
| Q |
316 |
taccctcttcagttgttgagtttgtgctatcacaccaaattgcttccctaatgcgaggaggtgc |
379 |
Q |
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| T |
8474041 |
taccttcttcggttgtcgagtttgtactaccacaccaaatggcctccctaatgcgaggaggtgc |
8474104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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