View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5213_low_20 (Length: 367)

Name: NF5213_low_20
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5213_low_20
NF5213_low_20
[»] chr6 (11 HSPs)
chr6 (19-359)||(7140679-7141018)
chr6 (28-359)||(8680302-8680631)
chr6 (19-188)||(8656594-8656762)
chr6 (44-188)||(7115514-7115657)
chr6 (44-188)||(7120586-7120729)
chr6 (44-188)||(7123990-7124133)
chr6 (274-352)||(7115689-7115767)
chr6 (274-352)||(7120761-7120839)
chr6 (271-352)||(7124162-7124243)
chr6 (282-359)||(8656823-8656900)
chr6 (35-123)||(7175393-7175481)
[»] scaffold0896 (4 HSPs)
scaffold0896 (19-127)||(1484-1592)
scaffold0896 (44-127)||(2267-2350)
scaffold0896 (271-352)||(2121-2202)
scaffold0896 (282-359)||(1310-1387)
[»] chr3 (2 HSPs)
chr3 (58-117)||(7125963-7126022)
chr3 (74-118)||(13490933-13490977)
[»] chr7 (1 HSPs)
chr7 (65-123)||(32413655-32413713)
[»] chr2 (2 HSPs)
chr2 (66-118)||(43864049-43864101)
chr2 (66-118)||(43875216-43875268)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 7140679 - 7141018
Alignment:
Q  19 caaaacctttgagatccttaaaatgtgaataacctattataaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7140679 caaaacctttgagatccttaaaatgtgaataacctattataaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 7140778  T
Q  119 tgcgtatttagtattcnnnnnnnnngagtatgtgaagtgaaacacagttgggtaaatcacttaacttgtcttcattctcatcgtgtaaatcacttagttt 218  Q
    ||||||||||||||||         ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7140779 tgcgtatttagtattcaaaaaaga-gagtatgtgaagtaaaacacagtcgggtaaatcacttaacttgtcttcattctcatcgtgtaaatcacttagttt 7140877  T
Q  219 gtcttcgttatcatggtcgttatattttgttcttaatctctccacgggattccggatttcttgcagtagaagaaacacccagtaatgccagaatgttacc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7140878 gtcttcgttatcatggtcgttatattttgttcttaatctctccacgggattctggatttcttgcagtagaagaaacacccagtaatgccagaatgttacc 7140977  T
Q  319 tcggccaccgacataagattcatattgatttgagtataatc 359  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  7140978 tcggccaccgacataagattcatattgatttgagtaaaatc 7141018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 28 - 359
Target Start/End: Original strand, 8680302 - 8680631
Alignment:
Q  28 tgagatccttaaaatgtgaataacctattataaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtattt 127  Q
    |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8680302 tgagattcttaaagtgtgaataacgtattataaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtattt 8680401  T
Q  128 agtattcnnnnnnnnngagtatgtgaagtgaaacacagttgggtaaatcacttaacttgtcttcattctcatcgtgtaaatcacttagtttgtcttcgtt 227  Q
    |||||||         ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8680402 agtattcaaaaaaga-gagtatgtgaagtaaaacacagtcggctaaatcacttaacttgtcttcattctcatcgtgtaaatcacttagtttgtcttcgtt 8680500  T
Q  228 atcatggtcgttatattttgttcttaatctctccacgggattccggatttcttgcagtagaagaaacacccagtaatgccagaatgttacctcggccacc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8680501 atcatggtcgttatattttgttcttaatctctccacgggattccggatttcttgcagtagaagaaacacccagtaatgccagaatgttacctcggccacc 8680600  T
Q  328 gacataagattcatattgatttgagtataatc 359  Q
    ||||||| |||||| |||||||||||| ||||    
T  8680601 gacataaaattcat-ttgatttgagtaaaatc 8680631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 8656594 - 8656762
Alignment:
Q  19 caaaacctttgagatccttaaaatgtgaataacctattataaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||| ||||| ||||||||||||    
T  8656594 caaaacctttgagatccttaaaatgtgaataacctattataaggcttgtaagacgcttccagagattcttccatcttttggccaaaacacaagtttgaac 8656693  T
Q  119 tgcgtatttagtattcnnnnnnnnngagtatgtgaagtgaaacacagttgggtaaatcacttaacttgtc 188  Q
    ||||||||| || |||         ||||||||||||| ||||||| | ||| ||||||||||| |||||    
T  8656694 tgcgtatttggtgttc-aaaaaagagagtatgtgaagtaaaacacaatcggggaaatcacttaatttgtc 8656762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 7115514 - 7115657
Alignment:
Q  44 tgaataacctattataaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcnnnnnnnnn 143  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| || |||             
T  7115514 tgaataacctattttaaggcttggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttc-aaaaaaga 7115612  T
Q  144 gagtatgtgaagtgaaacacagttgggtaaatcacttaacttgtc 188  Q
    ||||||||||||| ||||||| |  |||||||||||||| |||||    
T  7115613 gagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtc 7115657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 7120586 - 7120729
Alignment:
Q  44 tgaataacctattataaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcnnnnnnnnn 143  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| || |||             
T  7120586 tgaataacctattttaaggcttggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttc-aaaaaaga 7120684  T
Q  144 gagtatgtgaagtgaaacacagttgggtaaatcacttaacttgtc 188  Q
    ||||||||||||| ||||||| |  |||||||||||||| |||||    
T  7120685 gagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtc 7120729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 7123990 - 7124133
Alignment:
Q  44 tgaataacctattataaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcnnnnnnnnn 143  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| || |||             
T  7123990 tgaataacctattttaaggcttggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttc-aaaaaaga 7124088  T
Q  144 gagtatgtgaagtgaaacacagttgggtaaatcacttaacttgtc 188  Q
    ||||||||||||| ||||||| |  |||||||||||||| |||||    
T  7124089 gagtatgtgaagtaaaacacaatcaggtaaatcacttaatttgtc 7124133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 7115689 - 7115767
Alignment:
Q  274 atttcttgcagtagaagaaacacccagtaatgccagaatgttacctcggccaccgacataagattcatattgatttgag 352  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||| |||||||||||||||||||    
T  7115689 atttcttgcagtagaagaaacacccagtaatgccagaatgctaccgcggccatcaacatgagattcatattgatttgag 7115767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 7120761 - 7120839
Alignment:
Q  274 atttcttgcagtagaagaaacacccagtaatgccagaatgttacctcggccaccgacataagattcatattgatttgag 352  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||| |||||||||||||||||||    
T  7120761 atttcttgcagtagaagaaacacccagtaatgccagaatgctaccgcggccatcaacatgagattcatattgatttgag 7120839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 7124162 - 7124243
Alignment:
Q  271 cggatttcttgcagtagaagaaacacccagtaatgccagaatgttacctcggccaccgacataagattcatattgatttgag 352  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| | |||| |||||||||||||||||||    
T  7124162 cggatatcttgcagtagaagaaacacccaataatgccagaatgctacctcggccatcaacatgagattcatattgatttgag 7124243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 8656823 - 8656900
Alignment:
Q  282 cagtagaagaaacacccagtaatgccagaatgttacctcggccaccgacataagattcatattgatttgagtataatc 359  Q
    |||||||| ||||| ||||||||||||| ||||||||||  ||   ||||  ||||||||||||||||||||| ||||    
T  8656823 cagtagaaaaaacaaccagtaatgccagcatgttacctcaaccgtggacaagagattcatattgatttgagtaaaatc 8656900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 7175393 - 7175481
Alignment:
Q  35 cttaaaatgtgaataacctattataaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaactgcgt 123  Q
    |||||| |||||| ||| || ||||||| ||| ||| | |||||| | ||||||||||||  |||| ||||| ||||||||||||||||    
T  7175393 cttaaattgtgaagaacttactataaggtttgaaaggcgcttccagagattcttccatctagtggataaaatgcaagtttgaactgcgt 7175481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 1592 - 1484
Alignment:
Q  19 caaaacctttgagatccttaaaatgtgaataacctattataaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||| ||||| ||||||||||||    
T  1592 caaaacctttgagatccttaaaatgtgaataacctattataaggcttgtaagacgcttccagagattcttccatcttttggccaaaacacaagtttgaac 1493  T
Q  119 tgcgtattt 127  Q
    |||||||||    
T  1492 tgcgtattt 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 2350 - 2267
Alignment:
Q  44 tgaataacctattataaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtattt 127  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||    
T  2350 tgaataacctattttaaggcttggaagacacttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtattt 2267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 2202 - 2121
Alignment:
Q  271 cggatttcttgcagtagaagaaacacccagtaatgccagaatgttacctcggccaccgacataagattcatattgatttgag 352  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| | |||| |||||||||||||||||||    
T  2202 cggatatcttgcagtagaagaaacacccaataatgccagaatgctacctcggccatcaacatgagattcatattgatttgag 2121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 1387 - 1310
Alignment:
Q  282 cagtagaagaaacacccagtaatgccagaatgttacctcggccaccgacataagattcatattgatttgagtataatc 359  Q
    |||||||| ||||| ||||||||||||| ||||||||||  ||   ||||  ||||||||||||||||||||| ||||    
T  1387 cagtagaaaaaacaaccagtaatgccagcatgttacctcaaccgtggacaagagattcatattgatttgagtaaaatc 1310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 7126022 - 7125963
Alignment:
Q  58 taaggcttggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaa 117  Q
    ||||| |||||||||  ||||| | ||||||||||||||||||||| |||||||||||||    
T  7126022 taagggttggaagacgtttccagagattcttccatcttttggacaagatacaagtttgaa 7125963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 13490933 - 13490977
Alignment:
Q  74 cttccatatattcttccatcttttggacaaaatacaagtttgaac 118  Q
    |||||||| |||||||||||||||||| |||||  ||||||||||    
T  13490933 cttccatacattcttccatcttttggataaaattaaagtttgaac 13490977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 32413713 - 32413655
Alignment:
Q  65 tggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaactgcgt 123  Q
    |||||||| |||||| | ||||||||||||| |||||||||| ||||||||||| ||||    
T  32413713 tggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgt 32413655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 43864049 - 43864101
Alignment:
Q  66 ggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 118  Q
    ||||||| |||||| | |||  ||||||||||||||||||| |||||||||||    
T  43864049 ggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaac 43864101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 43875216 - 43875268
Alignment:
Q  66 ggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 118  Q
    ||||||| |||||| | |||  ||||||||||||||||||| |||||||||||    
T  43875216 ggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaac 43875268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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