View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_24 (Length: 346)
Name: NF5213_low_24
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 334
Target Start/End: Complemental strand, 219620 - 219307
Alignment:
| Q |
21 |
ctcggatgtcggggaatatcaattgtgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatatttta |
120 |
Q |
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| T |
219620 |
ctcggatgtcggggaatatcaattgtgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatatttta |
219521 |
T |
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| Q |
121 |
aaatgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaa |
220 |
Q |
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| T |
219520 |
aaatgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaa |
219421 |
T |
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| Q |
221 |
cttaccctcttctggattataagcataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctctta |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219420 |
cttaccctcttctggattataagcataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctctta |
219321 |
T |
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| Q |
321 |
accccttgatgatg |
334 |
Q |
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| T |
219320 |
accccttgatgatg |
219307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 144 - 334
Target Start/End: Original strand, 31651709 - 31651899
Alignment:
| Q |
144 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
243 |
Q |
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| T |
31651709 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
31651808 |
T |
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| Q |
244 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatg |
334 |
Q |
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| T |
31651809 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatg |
31651899 |
T |
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