View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_28 (Length: 312)
Name: NF5213_low_28
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 25845964 - 25846194
Alignment:
| Q |
21 |
gtaggataaagattttatagtgagattaattgaagatgaaattgacccttcataccaatggggagtcattcatactttca----ttccataatttggcag |
116 |
Q |
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| T |
25845964 |
gtaggataaaggttttatagtgagattaattgaagatgaaattgacccttcataccaatggggagtcattcatactttcattcattccataatttggcag |
25846063 |
T |
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| Q |
117 |
ccatgttgacatgtatgttgttgctaatagtaaagtaccataccgggggcctaaaaactaggtgctatacgtggtgaacacaaaatggtttctaccattt |
216 |
Q |
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| T |
25846064 |
ccatgttgacatgtatgtttttgctaatagtaaagtactataccgggggcctaaaaactaggtgctatacgtggtgaacacaaaatggtttctaccattt |
25846163 |
T |
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| Q |
217 |
aaccaaaataaaataaaataaaggtttctgc |
247 |
Q |
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| T |
25846164 |
aaccaaaataaaataaaataaaggtttctgc |
25846194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 25846221 - 25846285
Alignment:
| Q |
241 |
tttctgccaactagtttaccactatgcgtaagccatgaccaaattattttgaccagtagtataat |
305 |
Q |
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| T |
25846221 |
tttcttccaactagtttaccactatgcgtaagccatgaccaaattattttgactagtagtataat |
25846285 |
T |
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