View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_36 (Length: 285)
Name: NF5213_low_36
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 25179846 - 25180042
Alignment:
| Q |
11 |
cagagacatagcatgaagagtagtagtttacgccaacaaaatcaaatgaacctttgacttgcttagattgttctttagtaaactttggtaatcgtgatct |
110 |
Q |
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| T |
25179846 |
cagaaacatagcatgaagagtagtaatttatgccaataaaatcaaatgaaccactgacttgcttagattgctcttttgtaaactttggtaaccttgatct |
25179945 |
T |
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| Q |
111 |
taccaaggctctcatggtttttggataatctccattggccaagggatccataaacctataattaaacaaagaaatcgaataagttatcatatatata |
207 |
Q |
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| T |
25179946 |
aaccaaggctctcatggtttttggataatctccattgaccaagggatccataaacctataattatatatagaaatggaataagttatcatatatata |
25180042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 25168187 - 25168373
Alignment:
| Q |
17 |
catagcatgaagagtagtagtttacgccaacaaaatcaaatgaacctttgacttgcttagattgttctttagtaaactttggtaatcgtgatcttaccaa |
116 |
Q |
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| T |
25168187 |
catagcatgaagagtaatagtttatgccaataaaatcaaatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaa |
25168286 |
T |
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| Q |
117 |
ggctctcatggtttttggataatctccattggccaagggatccataaacctataattaaacaaagaaatcgaataagttatcatata |
203 |
Q |
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| T |
25168287 |
tgctctcatggtttttggataatctccattggccaagggatccataaacctataattaaacaaagaaattgaataagttatcatata |
25168373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 25253079 - 25252893
Alignment:
| Q |
17 |
catagcatgaagagtagtagtttacgccaacaaaatcaaatgaacctttgacttgcttagattgttctttagtaaactttggtaatcgtgatcttaccaa |
116 |
Q |
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| T |
25253079 |
catagcaagaagagtaatagtttatgccaataaaatcaaatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgatctgactaa |
25252980 |
T |
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| Q |
117 |
ggctctcatggtttttggataatctccattggccaagggatccataaacctataattaaacaaagaaatcgaataagttatcatata |
203 |
Q |
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| T |
25252979 |
ggctctcatggttttaggataatctccattggccaagggatccataaacctataattaaacaaagaaattgaataagttatcatata |
25252893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 25180082 - 25180131
Alignment:
| Q |
236 |
tatgttagctttatctttgtacttaccatccaaactgaaaatctgtattt |
285 |
Q |
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| T |
25180082 |
tatgttagctttatgtttgtacttaccatccaaattgaaagtctgtattt |
25180131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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