View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_38 (Length: 269)
Name: NF5213_low_38
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 25180172 - 25180394
Alignment:
| Q |
29 |
gcacagaccagttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaag |
128 |
Q |
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| T |
25180172 |
gcacagaccagttaatgatcaatgttatacctatcacacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaag |
25180271 |
T |
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| Q |
129 |
ttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccattt |
228 |
Q |
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| T |
25180272 |
ttgataatgtgcaactaaataaggttcggttccagaatctccaccggtgcaatttggattaaaccaagaagaacatcgacctggtgccattgcgccattt |
25180371 |
T |
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| Q |
229 |
gcatatccattttgactgtaact |
251 |
Q |
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||||||||||||||||||||||| |
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| T |
25180372 |
gcatatccattttgactgtaact |
25180394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 38 - 249
Target Start/End: Original strand, 25168513 - 25168724
Alignment:
| Q |
38 |
agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg |
137 |
Q |
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| T |
25168513 |
agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25168612 |
T |
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| Q |
138 |
tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatcca |
237 |
Q |
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| T |
25168613 |
tgcaactaaataaggttcagttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgaccaggtgccatttcaccatttgcataccca |
25168712 |
T |
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| Q |
238 |
ttttgactgtaa |
249 |
Q |
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| T |
25168713 |
tcttgactgtaa |
25168724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 38 - 249
Target Start/End: Complemental strand, 25252753 - 25252542
Alignment:
| Q |
38 |
agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg |
137 |
Q |
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| T |
25252753 |
agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25252654 |
T |
|
| Q |
138 |
tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatcca |
237 |
Q |
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| T |
25252653 |
tgcaactaaataaggttctgttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgtcctggtgccatttcaccatttgcataccca |
25252554 |
T |
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| Q |
238 |
ttttgactgtaa |
249 |
Q |
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| T |
25252553 |
tcttgactgtaa |
25252542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 242
Target Start/End: Original strand, 25159966 - 25160156
Alignment:
| Q |
52 |
gttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataag |
151 |
Q |
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| T |
25159966 |
gttatgcctattacacccttttgagattctttatactttttcttgtacacatcaacggctgcggcatgtgcaagaagttggtaatgtgttaccaaatagg |
25160065 |
T |
|
| Q |
152 |
gttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatccattttg |
242 |
Q |
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| T |
25160066 |
gctcgatcgcagaatcaccgccagtacaatttggattcaaccaactggagcaacgacccggtgccattcgcccatttgcatagccattttg |
25160156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 82 - 251
Target Start/End: Complemental strand, 9213949 - 9213780
Alignment:
| Q |
82 |
tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgcaat |
181 |
Q |
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||||| || |||||||||||||| |||||| | ||||||||||||||||| || |||| |||| ||| || || | |||||||||| |||||||||| |
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| T |
9213949 |
tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat |
9213850 |
T |
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| Q |
182 |
tgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatccattttgactgtaact |
251 |
Q |
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| T |
9213849 |
ttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaact |
9213780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 30361145 - 30361048
Alignment:
| Q |
82 |
tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgca |
179 |
Q |
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|||||||| |||||||| || | |||||| ||||||||||| || ||| | | ||||||||||||||| || || || || |||||||| |||||||| |
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| T |
30361145 |
tgatattttgtcttgtaaacttgaacagcggctgcatgagcaaggagtaggtgatgtgcaactaaatatggctctgtccccgaatcaccaccggtgca |
30361048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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