View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_40 (Length: 260)
Name: NF5213_low_40
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 16898792 - 16899014
Alignment:
| Q |
13 |
gagatgaaaggtaatgaaatataagacttagttgtagttaaaaacatggttaagtggattgttttgtactataatataaactaaagtgcatgcaaagtta |
112 |
Q |
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| T |
16898792 |
gagatgaaaggtgatgaaatataagacttagttgtagttaaaaacatggttaagtggattgttttgtactataatataaactaaagtgcatgcaatgtta |
16898891 |
T |
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| Q |
113 |
ttttaatgttgtttgatgttgaaagagtgttttatttttatgttgtagaactagaagaaacaaagaaagatagatcttaaggtagattctgcatacttat |
212 |
Q |
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| T |
16898892 |
ttttaatgttgtttgatgttgaaaaggtattttatttttatgttgtagaactagaagaaacaaagaaagatagatcttaaggtagattctgcatacttat |
16898991 |
T |
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| Q |
213 |
ctattgcaagtcagcaaaaccaa |
235 |
Q |
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| T |
16898992 |
ctattgcaagtcagcaaaaccaa |
16899014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 16901671 - 16901734
Alignment:
| Q |
16 |
atgaaaggtaatgaaatataagacttagttgtagttaaaaacatggttaagtggattgttttgta |
80 |
Q |
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||||||||| ||||| |||||||||||||||| | | |||||||| ||||| ||||||| ||||| |
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| T |
16901671 |
atgaaaggtgatgaagtataagacttagttgttgatgaaaacatgattaag-ggattgtgttgta |
16901734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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