View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_5 (Length: 577)
Name: NF5213_low_5
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 119 - 572
Target Start/End: Original strand, 32288054 - 32288510
Alignment:
| Q |
119 |
gccctaacgatcaatttcaaaatcttcctagaacgggcgatagtgaaaaagatattcagaagagcgatgcattccaaagtggtgttacggaaccagtagc |
218 |
Q |
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| T |
32288054 |
gccctaacgatcaatttcaaaatctttcaagaacggacgatagtgaaaaagatattcggaagagcgatgcattccaaagtggtgttacggaaccagtagc |
32288153 |
T |
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| Q |
219 |
cgcatacccggtgaccgcatacgcttatgaggccaccggagtaacacctgatggcaccaccacctcaaggtatgaatacactgctgtatatggcactgct |
318 |
Q |
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| T |
32288154 |
cgcatacccggtgaccgcatacgcttatgaggccaccggagtaacacctgatggcaccaccacctcaaggtatgaatacactgctgtatatggcactgct |
32288253 |
T |
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| Q |
319 |
gctcctggatttggcgatgcaaatgctggtggaggacagggtggacaagaagcaaatatgggcggcggcggcggtggtgctgcaggtggcaatgctggaa |
418 |
Q |
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| T |
32288254 |
gctcctggatttggcgatgcaaatgctggtggaggacagagtggacaagaagcaaatatgggtggcggcggcggtggtgctgcaggtggcaatactggaa |
32288353 |
T |
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| Q |
419 |
tgaacatgaacatgggtggcaataagcagaaatgaagaagctgcgtgcattgatatataaggtcatgggtcatagctagctatagtatttttagtgctta |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32288354 |
tgaacatgaacatgggtggcaataagcagaaatgaagaagctgcgtgcattgatatataaggtcatgggtcatagctagctatagtattattagtgctta |
32288453 |
T |
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| Q |
519 |
g---nnnnnnnnnncttggtgctggcaatggtgcttagttagtctgtctgtgctgct |
572 |
Q |
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| T |
32288454 |
gttttttttcttttcttggtgctggcaatggtgcttagttagtctgtgtgtgttgct |
32288510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 32287968 - 32288025
Alignment:
| Q |
18 |
aatatgaattgatccatataataacatcgcattatctcacactcgccgaatttataca |
75 |
Q |
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| T |
32287968 |
aatatgaattgatccatataataacatcgcatgatctcacactcgccgaatttataca |
32288025 |
T |
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