View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_52 (Length: 206)
Name: NF5213_low_52
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 38644119 - 38644159
Alignment:
| Q |
4 |
aatcgaaatggtcggagtgagcttaggtagacggaaaggga |
44 |
Q |
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| T |
38644119 |
aatcgaaatggtcggagtgagcttaggtagacgaaaaggga |
38644159 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 38644284 - 38644321
Alignment:
| Q |
158 |
ttgttaattttgttacacttgttcccagaagatgatgt |
195 |
Q |
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| T |
38644284 |
ttgttaattttgttacacttgttccctgaagatgatgt |
38644321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 38644173 - 38644206
Alignment:
| Q |
47 |
ccaccgccgaaggttgttggggacacaaacgacg |
80 |
Q |
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| T |
38644173 |
ccaccgccggaggttgttggggacacaaacgacg |
38644206 |
T |
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