View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5213_low_6 (Length: 516)
Name: NF5213_low_6
Description: NF5213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5213_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 15 - 497
Target Start/End: Original strand, 31456840 - 31457327
Alignment:
| Q |
15 |
atcaagttgatatatgttctatgcagtgaaattgctacaaacaatatcagacaaggtaaataacttgaattggaaggttacaaaccgttcctgcaacagt |
114 |
Q |
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| T |
31456840 |
atcaagttgatatatgttctatgcagtgaaattgctacaaacaatatcagacaaggtaaataacttgaattggaaggttacaaaccgttcctgcaacagt |
31456939 |
T |
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| Q |
115 |
ggtgataaaggttttggtaatgagattattgtagaggatcaaattgtaagaaatgtcacatgtgattgctctttcaactctagcactgtttgccatgtga |
214 |
Q |
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| T |
31456940 |
ggtgataaaggttttggtaatgagattattgtagaggatcaaattgtaagaaatgtcacatgtgattgctctttcaactctagcactgtttgccatgtga |
31457039 |
T |
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| Q |
215 |
caatgatgtaagtttctaaaacccctcccnnnnnnnttaaatcaaacaattttgttgatatttacacacaaaagagtttttaattttacaataaaactaa |
314 |
Q |
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| T |
31457040 |
caatgatgtaagtttctaaaacccctcccaaaaaaattaaatcaaacaattttgttgatatttacacacaaaagagtttttaattttacaataaaactaa |
31457139 |
T |
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| Q |
315 |
tgaatttttattgtacacataaaatatgtgccctatgtggacaatgtcacctttggttcatttatat-----taatttttatttattaaattcaactgtt |
409 |
Q |
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| T |
31457140 |
tgaatttttattgtacacataaaatatgtgccctatgtggacaatgtcacctttggttcatttatattactgtaatttttatttattaaattcaactgtt |
31457239 |
T |
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| Q |
410 |
tcatttgagaatgactaatgaaaataattggctatggtagctttctcaagggtctcaacatatctggagtttttccaagtgaatttgg |
497 |
Q |
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| T |
31457240 |
tcatttgagaatgactaattaaaataattggctatggtagctttctcaagggtctcaacatatctggaatttttccaagtgaatttgg |
31457327 |
T |
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