View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5214-Insertion-2 (Length: 546)
Name: NF5214-Insertion-2
Description: NF5214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5214-Insertion-2 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 55 - 546
Target Start/End: Complemental strand, 49107388 - 49106896
Alignment:
| Q |
55 |
taacgtaacgggatt-gagtactgagtcactaaatatgtgtgtgcaccagtggaataagataacttgtcaaaatctacagtagcacttaaaatggaattt |
153 |
Q |
| |
|
||||||||||||| | ||||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
49107388 |
taacgtaacgggactagagtattgagtcattaaatatgtgtgtgcaccaatggaagaagataacttgtcaaaatctacagtagcacttacaatggcattt |
49107289 |
T |
|
| Q |
154 |
ccttcttagacatttagctctgtagactcatcaaacatctttaaagagggatgacatctcttagattcatcaatgtattatggaacttcactttcctgaa |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49107288 |
ccttcttagacatttagctctgtagactcatcaaacatctttaaagagggatgacatctcttagattcatcaatgtattatggaacttcactttcctgta |
49107189 |
T |
|
| Q |
254 |
cacgtgccaaccaatgcagtcccaataaggtacctacaaggaaagttgtgaagcctaaacaacttcgagatatgatagaaagggcaatgtttgtagctta |
353 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49107188 |
cacgtgccaaccaatgcagtccaaataaggtacctacaaggaaagttgtgaagcctaaacaacttcaagatatgatagaaagggcaatgtttgtagctta |
49107089 |
T |
|
| Q |
354 |
gagtaataaatattgtttgaattaataaccatggaaattccctcaattgattgtgatgataatgtcaagtaacggagaattttgtagcataaaagtatta |
453 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49107088 |
gagtaataaatattgtttggattaataaccatggaaattccctcaattgattgtgatgataatgtcaagtaacggagaattttgtagcataaaagtatta |
49106989 |
T |
|
| Q |
454 |
caagttatgaagtgaattccctaattgtgaaagtagccttacacttttcaaactccaaactcatagttagtataattgcagactattttaatt |
546 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49106988 |
caagttatgaagtaaattccctaattgtgaaagtagccttacacttttcaaactcaaaactcatagttagtataattgcagactattttaatt |
49106896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 325 - 503
Target Start/End: Original strand, 50112050 - 50112228
Alignment:
| Q |
325 |
atgatagaaagggcaatgtttgtagcttagagtaataaatattgtttgaattaataaccatggaaattccctcaattgattgtgatgataatgtcaagta |
424 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
50112050 |
atgatagaaagcgcaatgtttatagcttaaagtaataagtattgtttgaattaataacaagggaaattaactcagatgattgtgatgataatgtcaagta |
50112149 |
T |
|
| Q |
425 |
acggagaattttgtagcataaaagtattacaagttatgaagtgaattccctaattgtgaaagtagccttacacttttca |
503 |
Q |
| |
|
| ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||| ||| |||| |
|
|
| T |
50112150 |
aaagagaattttgtagcataaaagaatcacaagttatgaagtgaattcccaaattgtgaacgtagccttaaactcttca |
50112228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 401 - 546
Target Start/End: Complemental strand, 50078011 - 50077866
Alignment:
| Q |
401 |
tgattgtgatgataatgtcaagtaacggagaattttgtagcataaaagtattacaagttatgaagtgaattccctaattgtgaaagtagccttacacttt |
500 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||| ||| |||| ||||||||| ||||| |
|
|
| T |
50078011 |
tgattgtgatgataatgtcaagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttt |
50077912 |
T |
|
| Q |
501 |
tcaaactccaaactcatagttagtataattgcagactattttaatt |
546 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50077911 |
tcaaactcaaaactcatagttagtataattgcagactattttaatt |
50077866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 401 - 546
Target Start/End: Complemental strand, 10796421 - 10796276
Alignment:
| Q |
401 |
tgattgtgatgataatgtcaagtaacggagaattttgtagcataaaagtattacaagttatgaagtgaattccctaattgtgaaagtagccttacacttt |
500 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||| ||| |||| ||||||||| ||||| |
|
|
| T |
10796421 |
tgattgtgatgataatgtcaagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttt |
10796322 |
T |
|
| Q |
501 |
tcaaactccaaactcatagttagtataattgcagactattttaatt |
546 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10796321 |
tcaaactcaaaactcatagttagtataattgcagactattttaatt |
10796276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 493
Target Start/End: Original strand, 43849695 - 43849756
Alignment:
| Q |
432 |
attttgtagcataaaagtattacaagttatgaagtgaattccctaattgtgaaagtagcctt |
493 |
Q |
| |
|
||||||||| |||||| || |||| |||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
43849695 |
attttgtagtgtaaaagaatcacaaattatgaagtgaatttcctgattgtgaacgtagcctt |
43849756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University