View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5214-Insertion-4 (Length: 383)

Name: NF5214-Insertion-4
Description: NF5214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5214-Insertion-4
NF5214-Insertion-4
[»] chr3 (3 HSPs)
chr3 (8-383)||(8341691-8342066)
chr3 (267-373)||(8333037-8333143)
chr3 (127-325)||(26727406-26727604)
[»] scaffold0061 (1 HSPs)
scaffold0061 (8-373)||(29813-30184)
[»] scaffold0017 (2 HSPs)
scaffold0017 (8-373)||(168608-168979)
scaffold0017 (8-382)||(173617-173997)
[»] chr1 (7 HSPs)
chr1 (109-382)||(44144710-44144984)
chr1 (116-325)||(44785757-44785966)
chr1 (8-279)||(44611509-44611786)
chr1 (28-325)||(35898821-35899124)
chr1 (135-382)||(11544682-11544933)
chr1 (274-382)||(44612085-44612193)
chr1 (8-79)||(44786005-44786076)
[»] chr2 (2 HSPs)
chr2 (117-373)||(29228546-29228802)
chr2 (117-373)||(29341845-29342101)
[»] chr5 (10 HSPs)
chr5 (8-103)||(29508253-29508348)
chr5 (288-370)||(29508115-29508197)
chr5 (285-373)||(29507536-29507624)
chr5 (285-370)||(29507611-29507696)
chr5 (285-370)||(29507683-29507768)
chr5 (285-323)||(29507874-29507912)
chr5 (285-323)||(29507946-29507984)
chr5 (285-323)||(29508090-29508128)
chr5 (285-370)||(29507755-29507840)
chr5 (285-370)||(29507971-29508056)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 8341691 - 8342066
Alignment:
Q  8 gttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacac 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341691 gttgtccgcatggaaggacggtccaactgcagattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacac 8341790  T
Q  108 gattcatattatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattc 207  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8341791 cattcacattatttgagtggtgaaatcaatccttcaataactgagttgtaacatctaacatatcttgacctcagttatttgaatactagtggtcaaattc 8341890  T
Q  208 caaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8341891 caaaatttattggatcgttcagcaacttacgataccttgatctctcaaacggtggttatgagggaaagattcctactcaacttgggaatctctcacaatt 8341990  T
Q  308 gcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaa 383  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8341991 gcaacaccttaatctcagtcttaatgatcttgttggtacaatccctttccaactcggaaatctttcgttattgcaa 8342066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 267 - 373
Target Start/End: Original strand, 8333037 - 8333143
Alignment:
Q  267 gaggggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaa 366  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||    
T  8333037 gagggaaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttaatgatcttgttggaaaaatccctttccaactcgaaa 8333136  T
Q  367 atctttc 373  Q
    |||||||    
T  8333137 atctttc 8333143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 127 - 325
Target Start/End: Original strand, 26727406 - 26727604
Alignment:
Q  127 gtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgtt 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||  | ||| ||||| || ||||| |||||||| || ||    
T  26727406 gtgaaatcaatccttcaataactgagttgcaacatctaacatatctagaccttagttcattgatgattagaggtcatatcccaaattttattggctcctt 26727505  T
Q  227 cagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcag 325  Q
    || ||| |||||||||||| ||||||||||||    || | | | |||||||||| |||||||||| || |||||||| |||||||||||| |||||||    
T  26727506 catcaatttacgataccttaatctctcaaatgccttttttaatgagaagattccttctcaacttggaaaactctcacagttgcaacaccttgatctcag 26727604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 373
Target Start/End: Complemental strand, 30184 - 29813
Alignment:
Q  8 gttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacac 107  Q
    ||||||| |||||||||| | ||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||     
T  30184 gttgtccacatggaaggaggatccaaatgcagattgctgcaaatggaagggagttcaatgcaacaatcaaaccggttatgttgaaaagcttgatctgcat 30085  T
Q  108 gattcata------ttatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtc 201  Q
    | |||  |      || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||    
T  30084 ggttcggaaacacgttgtttgagtggtgaaatcaatccttcaataactgagttgcaacatctaaaatatcttgacctcagatatttgaataccagtggtc 29985  T
Q  202 aaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctc 301  Q
    |||| |||||||||||||||||  ||||||| |||| ||||||||||||||||  |||||||||||| ||||||||||||| ||||||||||||||| ||    
T  29984 aaatcccaaaatttattggatccatcagcaaattacaataccttgatctctcatttggtggttatgatgggaagattcctattcaacttgggaatctatc 29885  T
Q  302 acaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 373  Q
    |||||||| ||| ||| |||| ||    ||||||||   ||||  |||||||||||||||||||||||||||    
T  29884 acaattgcgacatcttgatcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatctttc 29813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 373
Target Start/End: Original strand, 168608 - 168979
Alignment:
Q  8 gttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacac 107  Q
    ||||||| |||||||||| | ||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||     
T  168608 gttgtccacatggaaggaggatccaaatgcagattgctgcaaatggaagggagttcaatgcaacaatcaaaccggttatgttgaaaagcttgatctgcat 168707  T
Q  108 gattcata------ttatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtc 201  Q
    | |||  |      || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||    
T  168708 ggttcggaaacacgttgtttgagtggtgaaatcaatccttcaataactgagttgcaacatctaaaatatcttgacctcagatatttgaataccagtggtc 168807  T
Q  202 aaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctc 301  Q
    |||| |||||||||||||||||  ||||||| |||| ||||||||||||||||  |||||||||||| ||||||||||||| ||||||||||||||| ||    
T  168808 aaatcccaaaatttattggatccatcagcaaattacaataccttgatctctcatttggtggttatgatgggaagattcctattcaacttgggaatctatc 168907  T
Q  302 acaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 373  Q
    |||||||| ||| ||| |||| ||    ||||||||   ||||  |||||||||||||||||||||||||||    
T  168908 acaattgcgacatcttgatcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatctttc 168979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 173617 - 173997
Alignment:
Q  8 gttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacac 107  Q
    ||||||| ||||||||| ||||| || ||  ||||||||||||||||| ||| ||||||||||||   |||| ||||||||| |||  |||||||| ||     
T  173617 gttgtccacatggaagggcggtcaaaatgaagattgctgcaaatggaagggagttcaatgcaacatcgaaactggttatgttcaaagtcttgatctgcat 173716  T
Q  108 gattcata------ttatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtc 201  Q
    |  ||  |      | ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||    
T  173717 ggctcggaaacacgtcatttgagtggtgaaatcaatccttcaataactgagttacaaaatctaacatatttagacctcagttatttgaatactagtagtc 173816  T
Q  202 aaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctc 301  Q
    ||||  ||||||||||||| || |||||||| || ||  |||||||||| |||||||||  |||||| |||||| |||||  | ||||||| ||||| ||    
T  173817 aaatctcaaaatttattggctccttcagcaagttgcggcaccttgatctgtcaaatggtcattatgatgggaaggttccttttgaacttggaaatctatc 173916  T
Q  302 acaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgca 382  Q
    |||||||  | ||||| |||| || |  ||||| ||  |||||  ||||||||||||||||||||||||||| || |||||    
T  173917 acaattgtgataccttgatcttagctacaatgaactcattggagaaatccctttccaactcggaaatctttcattgttgca 173997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 109 - 382
Target Start/End: Original strand, 44144710 - 44144984
Alignment:
Q  109 attcatattatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattcc 208  Q
    |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||    
T  44144710 attcatatgatttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtggtcaaatccc 44144809  T
Q  209 aaaatttattggatcgttcagcaacttacgatacc-ttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaatt 307  Q
    |||||||||||| || |||||||| |||||| ||| |||||||||||  |||||||||||| |||||||||||| ||||||||||||||||||||| |||    
T  44144810 aaaatttattggctccttcagcaagttacgacacctttgatctctcagttggtggttatgatgggaagattcctgctcaacttgggaatctctcacgatt 44144909  T
Q  308 gcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgca 382  Q
    || ||||||| || | || |  ||||| ||  |||||  ||||||||||||||||||||||||||| ||||||||    
T  44144910 gcgacaccttgattttagctacaatgaactcattggagaaatccctttccaactcggaaatctttcattattgca 44144984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 116 - 325
Target Start/End: Complemental strand, 44785966 - 44785757
Alignment:
Q  116 ttatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaattt 215  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||||| ||||| || ||||||||||||||||    
T  44785966 ttatttgagtggtgtaatcaatccttcaataactgagctgcgacatctaaaatatctagacctcagtcatttgattactaatgatcaaattccaaaattt 44785867  T
Q  216 attggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacacc 315  Q
    |||||||| ||||||||||||||||||||||| ||||||  ||||||||| |  || ||||||||||||||||||||||||||||||||||||| |||||    
T  44785866 attggatccttcagcaacttacgataccttgacctctcagttggtggttacggtggaaagattcctactcaacttgggaatctctcacaattgcgacacc 44785767  T
Q  316 ttaatctcag 325  Q
    || |||||||    
T  44785766 ttgatctcag 44785757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 44611509 - 44611786
Alignment:
Q  8 gttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacac 107  Q
    ||||||| |||||||||| ||| ||  ||| ||||||||||||||||| ||| |||||||||||| |||||| ||||||||| |||  |||||||| ||     
T  44611509 gttgtccacatggaaggagggttcagatgcagattgctgcaaatggaagggagttcaatgcaacattcaaactggttatgttcaaagtcttgatctgcat 44611608  T
Q  108 gattcatattat------ttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtc 201  Q
    |  || |||         |||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  44611609 ggctcgtatcgacgccgattgtttggtgaaatcaatccttcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtc 44611708  T
Q  202 aaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattc 279  Q
    |||| |||||||||||||| || ||| |||||||| |||||||||||||||||||| |||||| ||| ||||||||||    
T  44611709 aaatcccaaaatttattggctccttctgcaacttaagataccttgatctctcaaatagtggttttgatgggaagattc 44611786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 28 - 325
Target Start/End: Original strand, 35898821 - 35899124
Alignment:
Q  28 gtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacacgattcatat------tattt 121  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||||| ||||| |||||| || |||  |||||| | || | |||| |       |||||    
T  35898821 gtccaaatgcagattgctgcaaatggaaaggagttcaatgcaacaaccaaactggttatattcaaagtcttgatttgcatggttcaaaaacacgctattt 35898920  T
Q  122 gagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattgga 221  Q
    ||| ||  ||||||| |||| ||||||||| ||||||||||| |||||| |||||||  ||| ||||||||||||||||||||| ||||||||||||||     
T  35898921 gagaggcaaaatcaaccctttaataactgaattgcaacatcttacatatttagaccttggttttttgaatactagtggtcaaatcccaaaatttattggc 35899020  T
Q  222 tcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatc 321  Q
    || ||||||||||| |||||| |||||||||||||| ||||||  || |||||||||||| |||| ||| |||||||||||   |||||| ||||| |||    
T  35899021 tccttcagcaacttgcgatacattgatctctcaaatagtggtttcgatgggaagattcctgctcagcttaggaatctctcattgttgcaataccttgatc 35899120  T
Q  322 tcag 325  Q
    ||||    
T  35899121 tcag 35899124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 382
Target Start/End: Complemental strand, 11544933 - 11544682
Alignment:
Q  135 aatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaact 234  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||  | ||| || |     |||||| |||||||||||||| || || | ||| |    
T  11544933 aatccttcaataactgagttacaacatctaaaatatttagacctcagtagtatgattattttcactcaaatcccaaaatttattggctccttaaccaagt 11544834  T
Q  235 tacgataccttgatctctcaaatggtggttatgaggggaag----attcctactcaacttgggaatctctcacaattgcaacaccttaatctcagattta 330  Q
    || |||||||| ||||||||||| ||  |||| | | ||||    |||||| |||||||||| ||||||||||| |||  ||||||| |||| || |  |    
T  11544833 tatgataccttaatctctcaaatagttattatcatgcgaagattcattccttctcaacttggcaatctctcacagttgagacaccttgatcttagctaca 11544734  T
Q  331 atgatcttgttggaacaatccctttccaactcggaaatctttcgttattgca 382  Q
    |||| ||  |||||  ||| ||||||||||||||||||||||| || |||||    
T  11544733 atgaactcattggagaaattcctttccaactcggaaatctttcattgttgca 11544682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 44612085 - 44612193
Alignment:
Q  274 agattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 373  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| |||| ||    ||||| ||   ||||  ||||||||||||||| |||||||||||    
T  44612085 agattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatctttc 44612184  T
Q  374 gttattgca 382  Q
     || |||||    
T  44612185 attgttgca 44612193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 44786076 - 44786005
Alignment:
Q  8 gttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaac 79  Q
    ||||||| ||| ||| |||||||||| ||| ||||| ||||||||| ||||| ||||||||||||| |||||    
T  44786076 gttgtccacatcgaaagacggtccaaatgcagattgttgcaaatgggaaggagttcaatgcaacaaccaaac 44786005  T

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Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 117 - 373
Target Start/End: Complemental strand, 29228802 - 29228546
Alignment:
Q  117 tatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaattta 216  Q
    ||||||||||||||||| ||| ||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  29228802 tatttgagtggtgaaataaattcttcactaactgagctgcaacatctaaaatatctagacctcagttatttgcatactagtggtcaaatcccaaaattta 29228703  T
Q  217 ttggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacacct 316  Q
    |||| || |||||||| |||| ||||||  |||||||||  |||  |||||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  29228702 ttggctccttcagcaagttacaatacctcaatctctcaacaggtcattatgatgggaagattccttctcaacttggaaatctctcacaattgcaacacct 29228603  T
Q  317 taatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 373  Q
    | |||| ||    ||||| ||  ||||| ||||||||||||||||||||||||||||    
T  29228602 tgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatctttc 29228546  T

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Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 117 - 373
Target Start/End: Complemental strand, 29342101 - 29341845
Alignment:
Q  117 tatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaattta 216  Q
    ||||||||||||||||| ||| ||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  29342101 tatttgagtggtgaaataaattcttcactaactgagctgcaacatctaaaatatctagacctcagttatttgcatactagtggtcaaatcccaaaattta 29342002  T
Q  217 ttggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacacct 316  Q
    |||| || |||||||| |||| ||||||  |||||||||  |||  |||||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  29342001 ttggctccttcagcaagttacaatacctcaatctctcaacaggtcattatgatgggaagattccttctcaacttggaaatctctcacaattgcaacacct 29341902  T
Q  317 taatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 373  Q
    | |||| ||    ||||| ||  ||||| ||||||||||||||||||||||||||||    
T  29341901 tgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatctttc 29341845  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 29508348 - 29508253
Alignment:
Q  8 gttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatct 103  Q
    ||||||| ||||||||||||  |||| ||  ||||||||||||||||| ||| ||| ||||||||||||||| ||||||||| |||  ||||||||    
T  29508348 gttgtccacatggaaggacgacccaaatgaagattgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatct 29508253  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 370
Target Start/End: Complemental strand, 29508197 - 29508115
Alignment:
Q  288 cttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 370  Q
    ||||| |||||||||||||||||||||||| ||||||||  |||||| ||  ||||| |||| || |||||||| ||||||||    
T  29508197 cttggaaatctctcacaattgcaacaccttgatctcagaggtaatgaactcattggagcaattcccttccaacttggaaatct 29508115  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 373
Target Start/End: Complemental strand, 29507624 - 29507536
Alignment:
Q  285 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 373  Q
    |||||||| |||||||||||||| ||||||||| ||||||| |  ||||| ||  ||||| |||||||||| ||||||  |||||||||    
T  29507624 caacttggaaatctctcacaattacaacaccttgatctcagctacaatgaactaattggagcaatccctttacaactccaaaatctttc 29507536  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 29507696 - 29507611
Alignment:
Q  285 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 370  Q
    |||||||| |||||||||||||||||||||||| |||||||    ||||| ||  ||||| |||| || |||||||| ||||||||    
T  29507696 caacttggaaatctctcacaattgcaacaccttgatctcagcgaaaatgaactcattggagcaattcccttccaacttggaaatct 29507611  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 29507768 - 29507683
Alignment:
Q  285 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 370  Q
    |||||||| |||||||||||||||||||||||| |||||||    ||||| ||  ||||| |||| || |||||||| ||||||||    
T  29507768 caacttggaaatctctcacaattgcaacaccttgatctcagcagaaatgaactcattggagcaattcccttccaacttggaaatct 29507683  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 29507912 - 29507874
Alignment:
Q  285 caacttgggaatctctcacaattgcaacaccttaatctc 323  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29507912 caacttggaaatctctcacaattgcaacaccttgatctc 29507874  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 29507984 - 29507946
Alignment:
Q  285 caacttgggaatctctcacaattgcaacaccttaatctc 323  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29507984 caacttggaaatctctcacaattgcaacaccttgatctc 29507946  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 29508128 - 29508090
Alignment:
Q  285 caacttgggaatctctcacaattgcaacaccttaatctc 323  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29508128 caacttggaaatctctcacaattgcaacaccttgatctc 29508090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 29507840 - 29507755
Alignment:
Q  285 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 370  Q
    |||||||| |||||||||||||||||||| ||| ||||||| |  ||||| ||  |||||  ||| || |||||||| ||||||||    
T  29507840 caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct 29507755  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 29508056 - 29507971
Alignment:
Q  285 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 370  Q
    |||||||| |||||||||||||||||||| ||| ||||||| |  ||||| ||  |||||  ||| || |||||||| ||||||||    
T  29508056 caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct 29507971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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