View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5214_high_1 (Length: 545)
Name: NF5214_high_1
Description: NF5214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5214_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 3 - 531
Target Start/End: Original strand, 15340055 - 15340583
Alignment:
| Q |
3 |
atcagattcaggaaagaagaatgatagtatttttgtgaaagagtccggaacacaaaatgggactctttttgtgccaaaatcaggaacacagaaagatggt |
102 |
Q |
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| T |
15340055 |
atcagattcaggaaagaagaatgacagtatttttgtgcgagagtccggaacacaaaatgggactctttttgtgccaaagtcaggaacacagaaagatggt |
15340154 |
T |
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| Q |
103 |
atcccaggtcctgatttttggtcatggacacctccggtggatagtgatgttcctccaaatgatactaatgggttgaagttagataccaagtcttcggtta |
202 |
Q |
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| T |
15340155 |
atcccaggtcctgatttttggtcatggacacccccggtggatagtgacgttccttcaaatgatgctaatgggttgaagttagataccaagtcttcagtta |
15340254 |
T |
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| Q |
203 |
atccaacattatccaatcctgttatcgagaaggaaaggtcctcgcaatctctcttgattccatttgagagtttacttactcaaagcaaaaacttccctac |
302 |
Q |
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| T |
15340255 |
atccaacattgtccaatcctgttatcgagaaggaaaggtcatcgcagtctctcttgattccatttgagagtttacttactcaaagcaaaaactttcctac |
15340354 |
T |
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| Q |
303 |
acttccaccactccagtcatcgttagaggttcaaaccgcttcttcaaatgtagagtctccttctgtggaagaggaaaagaaacgtgatgcgttatcttca |
402 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15340355 |
acttccaccactccagtcatctttagaggttcaaacctcttcttcaaatgtagagtctccttctgtggaagaggaaaagaaacgcgatgcgttatcttcc |
15340454 |
T |
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| Q |
403 |
gatcatgcggcagaagtagttcgagcccttgaaatggacagtaaagcatcacctattggtgtgaatcctgatggaacgagatggtggagagagacgggaa |
502 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
15340455 |
gaccatgcggcagaagtagttcgagcccttgaagtggacagtaaatcatcacctattggtgtgaatcctgatggaacaagatggtggagagagatgggaa |
15340554 |
T |
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| Q |
503 |
ttgagcaaagacctgatggtgtcatttgt |
531 |
Q |
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| T |
15340555 |
ttgagcaaagacctgatggtgtcatttgt |
15340583 |
T |
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